vtk: 7.1.1 -> 8.2.0

- also create vtk_7 as several packages don't build with 8.x:
  - itk5: vtkVersion.h header not found at compile time
  - ants: version in tree (2.2.0) is incompatible with 8.2
  - itk4: ants depends on both vtk and itk4, so use vtk_7
  - gdcm: vtk header issue
  - python3Packages.vtk: Python C API compilation error with Python 3.8

- upgrade vtkWithQt4 -> vtkWithQt5

pkgs/applications/science/biology/ants/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, fetchpatch, cmake, makeWrapper, itk4, vtk }:
+{ stdenv, fetchFromGitHub, fetchpatch, cmake, makeWrapper, itk4, vtk_7 }:
 
 stdenv.mkDerivation rec {
   pname    = "ANTs";
@@ -20,7 +20,7 @@ stdenv.mkDerivation rec {
   ];
 
   nativeBuildInputs = [ cmake makeWrapper ];
-  buildInputs = [ itk4 vtk ];
+  buildInputs = [ itk4 vtk_7 ];
 
   cmakeFlags = [ "-DANTS_SUPERBUILD=FALSE" "-DUSE_VTK=TRUE" ];
 

pkgs/development/libraries/gdcm/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, cmake, vtk, darwin }:
+{ stdenv, fetchurl, cmake, vtk_7, darwin }:
 
 stdenv.mkDerivation rec {
   version = "3.0.5";
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
   ];
 
   enableParallelBuilding = true;
-  buildInputs = [ cmake vtk ] ++ stdenv.lib.optional stdenv.isDarwin [ darwin.apple_sdk.frameworks.ApplicationServices darwin.apple_sdk.frameworks.Cocoa ];
+  buildInputs = [ cmake vtk_7 ] ++ stdenv.lib.optional stdenv.isDarwin [ darwin.apple_sdk.frameworks.ApplicationServices darwin.apple_sdk.frameworks.Cocoa ];
   propagatedBuildInputs = [ ];
 
   meta = with stdenv.lib; {

pkgs/development/libraries/itk/4.x.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, cmake, libX11, libuuid, xz, vtk }:
+{ stdenv, fetchurl, cmake, libX11, libuuid, xz, vtk_7 }:
 
 stdenv.mkDerivation rec {
   name = "itk-4.13.2";
@@ -22,7 +22,7 @@ stdenv.mkDerivation rec {
   enableParallelBuilding = true;
 
   nativeBuildInputs = [ cmake xz ];
-  buildInputs = [ libX11 libuuid vtk ];
+  buildInputs = [ libX11 libuuid vtk_7 ];
 
   meta = {
     description = "Insight Segmentation and Registration Toolkit";

pkgs/development/libraries/itk/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, cmake, makeWrapper
-, pkgconfig, libX11, libuuid, xz, vtk, Cocoa }:
+, pkgconfig, libX11, libuuid, xz, vtk_7, Cocoa }:
 
 stdenv.mkDerivation rec {
   pname = "itk";
@@ -25,7 +25,7 @@ stdenv.mkDerivation rec {
   enableParallelBuilding = true;
 
   nativeBuildInputs = [ cmake xz makeWrapper ];
-  buildInputs = [ libX11 libuuid vtk ] ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa ];
+  buildInputs = [ libX11 libuuid vtk_7 ] ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa ];
 
   postInstall = ''
     wrapProgram "$out/bin/h5c++" --prefix PATH ":" "${pkgconfig}/bin"

pkgs/development/libraries/vtk/7.x.nix

@@ -0,0 +1,74 @@
+{ stdenv, fetchurl, cmake, libGLU, libGL, libX11, xorgproto, libXt, libtiff
+, fetchpatch
+, qtLib ? null
+, enablePython ? false, python ? null
+# Darwin support
+, Cocoa, CoreServices, DiskArbitration, IOKit, CFNetwork, Security, GLUT, OpenGL
+, ApplicationServices, CoreText, IOSurface, ImageIO, xpc, libobjc }:
+
+with stdenv.lib;
+
+let
+  os = stdenv.lib.optionalString;
+  majorVersion = "7.1";
+  minorVersion = "1";
+  version = "${majorVersion}.${minorVersion}";
+in
+
+stdenv.mkDerivation rec {
+  name = "vtk-${os (qtLib != null) "qvtk-"}${version}";
+  src = fetchurl {
+    url = "${meta.homepage}files/release/${majorVersion}/VTK-${version}.tar.gz";
+    sha256 = "0nm7xwwj7rnsxjdv2ssviys8nhci4n9iiiqm2y14s520hl2dsp1d";
+  };
+
+  patches = [
+    (fetchpatch {
+      url = "https://gitlab.kitware.com/vtk/vtk/-/commit/706f1b397df09a27ab8981ab9464547028d0c322.diff";
+      sha256 = "1q3pi5h40g05pzpbqp75xlgzvbfvyw8raza51svmi7d8dlslqybx";
+    })
+  ];
+
+  nativeBuildInputs = [ cmake ];
+
+  buildInputs = [ libtiff ]
+    ++ optional (qtLib != null) qtLib
+    ++ optionals stdenv.isLinux [ libGLU libGL libX11 xorgproto libXt ]
+    ++ optionals stdenv.isDarwin [ xpc Cocoa CoreServices DiskArbitration IOKit
+                                   CFNetwork Security ApplicationServices CoreText
+                                   IOSurface ImageIO OpenGL GLUT ]
+    ++ optional enablePython [
+      python
+    ];
+  propagatedBuildInputs = stdenv.lib.optionals stdenv.isDarwin [ libobjc ];
+
+  preBuild = ''
+    export LD_LIBRARY_PATH="$(pwd)/lib";
+  '';
+
+  # Shared libraries don't work, because of rpath troubles with the current
+  # nixpkgs cmake approach. It wants to call a binary at build time, just
+  # built and requiring one of the shared objects.
+  # At least, we use -fPIC for other packages to be able to use this in shared
+  # objects.
+  cmakeFlags = [ "-DCMAKE_C_FLAGS=-fPIC" "-DCMAKE_CXX_FLAGS=-fPIC" "-DVTK_USE_SYSTEM_TIFF=1" "-DOPENGL_INCLUDE_DIR=${libGL}/include" ]
+    ++ optional (qtLib != null) [ "-DVTK_Group_Qt:BOOL=ON" ]
+    ++ optional stdenv.isDarwin [ "-DOPENGL_INCLUDE_DIR=${OpenGL}/Library/Frameworks" ]
+    ++ optional enablePython [ "-DVTK_WRAP_PYTHON:BOOL=ON" ];
+
+  postPatch = stdenv.lib.optionalString stdenv.isDarwin ''
+    sed -i 's|COMMAND vtkHashSource|COMMAND "DYLD_LIBRARY_PATH=''${VTK_BINARY_DIR}/lib" ''${VTK_BINARY_DIR}/bin/vtkHashSource-${majorVersion}|' ./Parallel/Core/CMakeLists.txt
+    sed -i 's/fprintf(output, shift)/fprintf(output, "%s", shift)/' ./ThirdParty/libxml2/vtklibxml2/xmlschemas.c
+    sed -i 's/fprintf(output, shift)/fprintf(output, "%s", shift)/g' ./ThirdParty/libxml2/vtklibxml2/xpath.c
+  '';
+
+  enableParallelBuilding = true;
+
+  meta = {
+    description = "Open source libraries for 3D computer graphics, image processing and visualization";
+    homepage = "https://www.vtk.org/";
+    license = stdenv.lib.licenses.bsd3;
+    maintainers = with stdenv.lib.maintainers; [ knedlsepp ];
+    platforms = with stdenv.lib.platforms; unix;
+  };
+}

pkgs/development/libraries/vtk/default.nix

@@ -10,8 +10,8 @@ with stdenv.lib;
 
 let
   os = stdenv.lib.optionalString;
-  majorVersion = "7.1";
+  majorVersion = "8.2";
-  minorVersion = "1";
+  minorVersion = "0";
   version = "${majorVersion}.${minorVersion}";
 in
 
@@ -19,20 +19,13 @@ stdenv.mkDerivation rec {
   name = "vtk-${os (qtLib != null) "qvtk-"}${version}";
   src = fetchurl {
     url = "${meta.homepage}files/release/${majorVersion}/VTK-${version}.tar.gz";
-    sha256 = "0nm7xwwj7rnsxjdv2ssviys8nhci4n9iiiqm2y14s520hl2dsp1d";
+    sha256 = "1fspgp8k0myr6p2a6wkc21ldcswb4bvmb484m12mxgk1a9vxrhrl";
   };
 
-  patches = [
-    (fetchpatch {
-      url = "https://gitlab.kitware.com/vtk/vtk/-/commit/706f1b397df09a27ab8981ab9464547028d0c322.diff";
-      sha256 = "1q3pi5h40g05pzpbqp75xlgzvbfvyw8raza51svmi7d8dlslqybx";
-    })
-  ];
-
   nativeBuildInputs = [ cmake ];
 
   buildInputs = [ libtiff ]
-    ++ optional (qtLib != null) qtLib
+    ++ optionals (qtLib != null) (with qtLib; [ qtbase qtx11extras qttools ])
     ++ optionals stdenv.isLinux [ libGLU libGL libX11 xorgproto libXt ]
     ++ optionals stdenv.isDarwin [ xpc Cocoa CoreServices DiskArbitration IOKit
                                    CFNetwork Security ApplicationServices CoreText
@@ -47,7 +40,7 @@ stdenv.mkDerivation rec {
   '';
 
   # Shared libraries don't work, because of rpath troubles with the current
-  # nixpkgs camke approach. It wants to call a binary at build time, just
+  # nixpkgs cmake approach. It wants to call a binary at build time, just
   # built and requiring one of the shared objects.
   # At least, we use -fPIC for other packages to be able to use this in shared
   # objects.

pkgs/top-level/all-packages.nix

@@ -14872,6 +14872,14 @@ in
   vte_290 = callPackage ../development/libraries/vte/2.90.nix { };
 
   vtk = callPackage ../development/libraries/vtk {
+    inherit (darwin) libobjc;
+    inherit (darwin.apple_sdk.libs) xpc;
+    inherit (darwin.apple_sdk.frameworks) Cocoa CoreServices DiskArbitration
+                                          IOKit CFNetwork Security ApplicationServices
+                                          CoreText IOSurface ImageIO OpenGL GLUT;
+  };
+
+  vtk_7 = callPackage ../development/libraries/vtk/7.x.nix {
     stdenv = if stdenv.isDarwin then stdenv else gcc8Stdenv;
     inherit (darwin) libobjc;
     inherit (darwin.apple_sdk.libs) xpc;
@@ -14911,7 +14919,7 @@ in
     });
   };
 
-  vtkWithQt4 = vtk.override { qtLib = qt4; };
+  vtkWithQt5 = vtk.override { qtLib = qt5; };
 
   vxl = callPackage ../development/libraries/vxl {
     libpng = libpng12;

pkgs/top-level/python-packages.nix

@@ -7061,7 +7061,7 @@ in {
 
   visitor = callPackage ../development/python-modules/visitor { };
 
-  vtk = toPythonModule (pkgs.vtk.override {
+  vtk = toPythonModule (pkgs.vtk_7.override {
     inherit (self) python;
     enablePython = true;
   });