Merge pull request #296774 from Kupac/upgrade-salmon

salmon: 1.10.2 -> 1.10.3

pkgs/by-name/sa/salmon/fetch-pufferfish.patch

@@ -1,5 +1,5 @@
 diff --git a/scripts/fetchPufferfish.sh b/scripts/fetchPufferfish.sh
-index bf2574e0..42582806 100755
+index 95e30053..8866767c 100755
 --- a/scripts/fetchPufferfish.sh
 +++ b/scripts/fetchPufferfish.sh
 @@ -11,10 +11,6 @@ CURR_DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
@@ -17,11 +17,11 @@ index bf2574e0..42582806 100755
      rm -fr ${INSTALL_DIR}/src/pufferfish
  fi
  
--SVER=salmon-v1.10.2
+-SVER=salmon-v1.10.3
 -#SVER=develop
 -#SVER=sketch-mode
 -
--EXPECTED_SHA256=f225b74833f71dcf767a565345224357fb091f90ce79717abc836814d9ccd101
+-EXPECTED_SHA256=52b6699de0d33814b73edb3455175568c2330d8014be017dce7b564e54134860 
 -
 -mkdir -p ${EXTERNAL_DIR}
 -curl -k -L https://github.com/COMBINE-lab/pufferfish/archive/${SVER}.zip -o ${EXTERNAL_DIR}/pufferfish.zip

pkgs/by-name/sa/salmon/package.nix

@@ -20,20 +20,20 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "salmon";
-  version = "1.10.2";
+  version = "1.10.3";
 
   pufferFishSrc = fetchFromGitHub {
     owner = "COMBINE-lab";
     repo = "pufferfish";
     rev = "salmon-v${finalAttrs.version}";
-    hash = "sha256-JKbUFBEsqnENl4vFqve1FCd4TI3n9bRi2RNHC8QGQGc=";
+    hash = "sha256-g4pfNuc620WQ7UDv8PQHVbbTVt78aGVqcHHMszmBIkA=";
   };
 
   src = fetchFromGitHub {
     owner = "COMBINE-lab";
     repo = "salmon";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-kwqoUmVCqjr/xRxJjQKaFjjCQW+MFASHJ2f9OiAumNU=";
+    hash = "sha256-HGcDqu0XzgrU3erHavigXCoj3VKk82ixMLY10Kk9MW4=";
   };
 
   patches = [