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Update htslib and dependent packages

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This commit is contained in:
Orivej Desh 2018-09-21 22:49:48 +00:00
commit 39817f728b
4 changed files with 9 additions and 9 deletions
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6
pkgs/applications/science/biology/platypus/default.nix
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@ -4,13 +4,13 @@ let python = python27.withPackages (ps: with ps; [ cython ]);
in stdenv.mkDerivation rec {
name = "platypus-unstable-${version}";
version = "2017-03-07";
version = "2018-07-22";
src = fetchFromGitHub {
owner = "andyrimmer";
repo = "Platypus";
rev = "cbbd914";
sha256 = "0xgj3pl7n4c12j5pp5qyjfk4rsvb5inwzrpcbhdf3br5f3mmdsb9";
rev = "3e72641c69800da0cd4906b090298e654d316ee1";
sha256 = "0nah6r54b8xm778gqyb8b7rsd76z8ji4g73sm6rvpw5s96iib1vw";
};
buildInputs = [ htslib python zlib makeWrapper ];

4
pkgs/applications/science/biology/samtools/default.nix
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@ -3,11 +3,11 @@
stdenv.mkDerivation rec {
name = "${pname}-${version}";
pname = "samtools";
version = "1.8";
version = "1.9";
src = fetchurl {
url = "https://github.com/samtools/samtools/releases/download/${version}/${name}.tar.bz2";
sha256 = "05myg7bs90i68qbqab9cdg9rqj2xh39azibrx82ipzc5kcfvqhn9";
sha256 = "10ilqbmm7ri8z431sn90lvbjwizd0hhkf9rcqw8j823hf26nhgq8";
};
nativeBuildInputs = [ perl ];

4
pkgs/development/libraries/science/biology/htslib/default.nix
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@ -3,11 +3,11 @@
stdenv.mkDerivation rec {
name = "${pname}-${version}";
pname = "htslib";
version = "1.7";
version = "1.9";
src = fetchurl {
url = "https://github.com/samtools/htslib/releases/download/${version}/${name}.tar.bz2";
sha256 = "be3d4e25c256acdd41bebb8a7ad55e89bb18e2fc7fc336124b1e2c82ae8886c6";
sha256 = "16ljv43sc3fxmv63w7b2ff8m1s7h89xhazwmbm1bicz8axq8fjz0";
};
# perl is only used during the check phase.

4
pkgs/development/python-modules/pysam/default.nix
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@ -14,7 +14,7 @@
buildPythonPackage rec {
pname = "pysam";
version = "0.13.0";
version = "0.15.1";
# Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is
# missing some files which cause test failures.
@ -23,7 +23,7 @@ buildPythonPackage rec {
owner = "pysam-developers";
repo = "pysam";
rev = "v${version}";
sha256 = "1lwbcl38w1x0gciw5psjp87msmv9zzkgiqikg9b83dqaw2y5az1i";
sha256 = "1vj367w6xbn9bpmksm162l1aipf7cj97h1q83y7jcpm33ihwpf7x";
};
buildInputs = [ bzip2 curl cython lzma zlib ];