Merge pull request #79293 from NixOS/staging-next

Staging next (with glibc 2.30)

pkgs/applications/audio/distrho/default.nix

@@ -26,7 +26,7 @@ in stdenv.mkDerivation rec {
     runHook postConfigure
   '';
 
-  patchPhase = ''
+  postPatch = ''
     sed -e "s#@./scripts#sh scripts#" -i Makefile
   '';
 

pkgs/applications/misc/gcal/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, ncurses  }:
+{ stdenv, fetchurl, ncurses, fetchpatch }:
 
 stdenv.mkDerivation rec {
   pname = "gcal";
@@ -9,6 +9,13 @@ stdenv.mkDerivation rec {
     sha256 = "1av11zkfirbixn05hyq4xvilin0ncddfjqzc4zd9pviyp506rdci";
   };
 
+  patches = [
+    (fetchpatch {
+      url = "https://src.fedoraproject.org/rpms/gcal/raw/master/f/gcal-glibc-no-libio.patch";
+      sha256 = "0l4nw9kgzsay32rsdwvs75pbp4fhx6pfm85paynfbd20cdm2n2kv";
+    })
+  ];
+
   enableParallelBuilding = true;
 
   buildInputs = [ ncurses ];

pkgs/applications/misc/spacefm/default.nix

@@ -13,6 +13,8 @@ stdenv.mkDerivation rec {
     sha256 = "089r6i40lxcwzp60553b18f130asspnzqldlpii53smz52kvpirx";
   };
 
+  patches = [ ./glibc-fix.patch ];
+
   configureFlags = [
     "--with-bash-path=${pkgs.bash}/bin/bash"
   ];

pkgs/applications/misc/spacefm/glibc-fix.patch

@@ -0,0 +1,12 @@
+diff --git a/src/main.c b/src/main.c
+index 27f5614..2b45708 100644
+--- a/src/main.c
++++ b/src/main.c
+@@ -23,6 +23,7 @@
+ #include <sys/types.h>
+ #include <sys/socket.h>
+ #include <sys/un.h>
++#include <sys/sysmacros.h>
+ 
+ #include <signal.h>
+ 

pkgs/applications/misc/ssw/default.nix

@@ -0,0 +1,21 @@
+{ stdenv, fetchurl, pkg-config, gtk3 }:
+
+stdenv.mkDerivation rec {
+  pname = "ssw";
+  version = "0.3";
+
+  src = fetchurl {
+    url = "https://alpha.gnu.org/gnu/ssw/spread-sheet-widget-${version}.tar.gz";
+    sha256 = "1h93yyh2by6yrmkwqg38nd5knids05k5nqzcihc1hdwgzg3c4b8y";
+  };
+
+  nativeBuildInputs = [ pkg-config ];
+  buildInputs = [ gtk3 ];
+
+  meta = with stdenv.lib; {
+    homepage = "https://www.gnu.org/software/ssw/";
+    license = licenses.gpl3;
+    description = "GNU Spread Sheet Widget";
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/misc/vit/default.nix

@@ -1,7 +1,8 @@
 { lib
 , python3Packages
+, taskwarrior
 , glibcLocales
-, taskwarrior }:
+}:
 
 with python3Packages;
 
@@ -21,6 +22,7 @@ buildPythonApplication rec {
     tzlocal
     urwid
   ];
+
   checkInputs = [ glibcLocales ];
 
   makeWrapperArgs = [ "--suffix" "PATH" ":" "${taskwarrior}/bin" ];

pkgs/applications/science/math/pspp/default.nix

@@ -1,20 +1,23 @@
 { stdenv, fetchurl, libxml2, readline, zlib, perl, cairo, gtk3, gsl
 , pkgconfig, gtksourceview, pango, gettext, dconf
 , makeWrapper, gsettings-desktop-schemas, hicolor-icon-theme
+, texinfo, ssw
 }:
 
 stdenv.mkDerivation rec {
-  name = "pspp-1.0.1";
+  pname = "pspp";
+  version = "1.2.0";
 
   src = fetchurl {
-    url = "mirror://gnu/pspp/${name}.tar.gz";
+    url = "mirror://gnu/pspp/${pname}-${version}.tar.gz";
-    sha256 = "1r8smr5057993h90nx0mdnff8nxw9x546zzh6qpy4h3xblp1la5s";
+    sha256 = "07pp27zycrb5x927jwaj9r3q7hy915jh51xs85zxby6gfiwl63m5";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ pkgconfig texinfo ];
   buildInputs = [ libxml2 readline zlib perl cairo gtk3 gsl
     gtksourceview pango gettext
-    makeWrapper gsettings-desktop-schemas hicolor-icon-theme ];
+    makeWrapper gsettings-desktop-schemas hicolor-icon-theme ssw
+  ];
 
   doCheck = false;
 

pkgs/applications/virtualization/xen/4.8.nix

@@ -185,7 +185,10 @@ callPackage (import ./generic.nix (rec {
     # Avoid a glibc >= 2.25 deprecation warnings that get fatal via -Werror.
     sed 1i'#include <sys/sysmacros.h>' \
       -i tools/blktap2/control/tap-ctl-allocate.c \
-      -i tools/libxl/libxl_device.c
+      -i tools/libxl/libxl_device.c \
+      ${optionalString withInternalQemu "-i tools/qemu-xen/hw/9pfs/9p.c"}
+
+    sed -i -e '/sys\/sysctl\.h/d' tools/blktap2/drivers/block-remus.c
   '';
 
   passthru.qemu-system-i386 = if withInternalQemu

pkgs/development/compilers/mono/4.nix

@@ -5,4 +5,5 @@ callPackage ./generic.nix ({
   version = "4.8.1.0";
   sha256 = "1vyvp2g28ihcgxgxr8nhzyzdmzicsh5djzk8dk1hj5p5f2k3ijqq";
   enableParallelBuilding = false; # #32386, https://hydra.nixos.org/build/65600645
+  extraPatches = [ ./mono4-glibc.patch ];
 })

pkgs/development/compilers/mono/generic.nix

@@ -1,6 +1,7 @@
 { stdenv, fetchurl, bison, pkgconfig, glib, gettext, perl, libgdiplus, libX11, callPackage, ncurses, zlib, withLLVM ? false, cacert, Foundation, libobjc, python, version, sha256, autoconf, libtool, automake, cmake, which
 , enableParallelBuilding ? true
 , srcArchiveSuffix ? "tar.bz2"
+, extraPatches ? []
 }:
 
 let
@@ -41,7 +42,7 @@ stdenv.mkDerivation rec {
 
   # We want pkg-config to take priority over the dlls in the Mono framework and the GAC
   # because we control pkg-config
-  patches = [ ./pkgconfig-before-gac.patch ];
+  patches = [ ./pkgconfig-before-gac.patch ] ++ extraPatches;
 
   # Patch all the necessary scripts. Also, if we're using LLVM, we fix the default
   # LLVM path to point into the Mono LLVM build, since it's private anyway.

pkgs/development/compilers/mono/mono4-glibc.patch

@@ -0,0 +1,12 @@
+diff --git a/mono/io-layer/processes.c b/mono/io-layer/processes.c
+index 53c271a4..84bd3252 100644
+--- a/mono/io-layer/processes.c
++++ b/mono/io-layer/processes.c
+@@ -19,6 +19,7 @@
+ #include <errno.h>
+ #include <sys/types.h>
+ #include <sys/stat.h>
++#include <sys/sysmacros.h>
+ #include <unistd.h>
+ #ifdef HAVE_SIGNAL_H
+ #include <signal.h>

pkgs/development/compilers/wcc/default.nix

@@ -17,6 +17,8 @@ stdenv.mkDerivation {
   postPatch = ''
     sed -i src/wsh/include/libwitch/wsh.h src/wsh/scripts/INDEX \
       -e "s#/usr/share/wcc#$out/share/wcc#"
+
+    sed -i -e '/stropts.h>/d' src/wsh/include/libwitch/wsh.h
   '';
 
   installFlags = [ "DESTDIR=$(out)" ];

pkgs/development/compilers/z88dk/default.nix

@@ -1,14 +1,14 @@
 { fetchFromGitHub, stdenv, makeWrapper, unzip, libxml2, m4, uthash, which }:
 
 stdenv.mkDerivation rec {
-  pname = "z88dk";
+  pname = "z88dk-unstable";
-  version = "unstable-2019-05-09";
+  version = "2020-01-27";
 
   src = fetchFromGitHub {
     owner = "z88dk";
     repo  = "z88dk";
-    rev = "826d68632c3a7c17df88dd2ec54571a6041da69c";
+    rev = "efdd07c2e2229cac7cfef97ec01f478004846e39";
-    sha256 = "104qgb01sdb97mkcxnq1cdlqi5qvjm4rd9bg5r42pdfz81ss49xj";
+    sha256 = "0jcks5ygp256lmzmllffp4yb38cxjgdyqnnimkj4s65095cfasyb";
     fetchSubmodules = true;
   };
 

pkgs/development/interpreters/python/cpython/3.7/darwin-libutil.patch

@@ -0,0 +1,23 @@
+diff --git a/Modules/posixmodule.c b/Modules/posixmodule.c
+index c3682b4..16826c6 100644
+--- a/Modules/posixmodule.c
++++ b/Modules/posixmodule.c
+@@ -5880,15 +5880,13 @@ error:
+ #if defined(HAVE_OPENPTY) || defined(HAVE_FORKPTY) || defined(HAVE_DEV_PTMX)
+ #ifdef HAVE_PTY_H
+ #include <pty.h>
+-#else
++#endif
+ #ifdef HAVE_LIBUTIL_H
+ #include <libutil.h>
+-#else
++#endif
+ #ifdef HAVE_UTIL_H
+ #include <util.h>
+-#endif /* HAVE_UTIL_H */
+-#endif /* HAVE_LIBUTIL_H */
+-#endif /* HAVE_PTY_H */
++#endif
+ #ifdef HAVE_STROPTS_H
+ #include <stropts.h>
+ #endif

pkgs/development/interpreters/python/cpython/default.nix

@@ -103,10 +103,7 @@ in with passthru; stdenv.mkDerivation {
     ./3.5/ld_library_path.patch
   ] ++ optionals (isPy37 || isPy38) [
     # Fix darwin build https://bugs.python.org/issue34027
-    (fetchpatch {
+    ./3.7/darwin-libutil.patch
-      url = https://bugs.python.org/file47666/darwin-libutil.patch;
-      sha256 = "0242gihnw3wfskl4fydp2xanpl8k5q7fj4dp7dbbqf46a4iwdzpa";
-    })
   ] ++ optionals (isPy3k && hasDistutilsCxxPatch) [
     # Fix for http://bugs.python.org/issue1222585
     # Upstream distutils is calling C compiler to compile C++ code, which

pkgs/development/libraries/c-blosc/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "c-blosc";
-  version = "1.17.0";
+  version = "1.17.1";
 
   src = fetchFromGitHub {
     owner = "Blosc";
     repo = "c-blosc";
     rev = "v${version}";
-    sha256 = "0c4vh7kyxm57jclk8jlcnc11w7nd2m81qk454gav58aji85w16hg";
+    sha256 = "1asp3xmbvdnz1mj1pl1ykzz61cybvkxz3cdn43zh1z0x1qlgwm80";
   };
 
   buildInputs = [ cmake ];

pkgs/development/libraries/glibc/CVE-2018-11236.patch

@@ -1,146 +0,0 @@
-From 5460617d1567657621107d895ee2dd83bc1f88f2 Mon Sep 17 00:00:00 2001
-From: Paul Pluzhnikov <ppluzhnikov@google.com>
-Date: Tue, 8 May 2018 18:12:41 -0700
-Subject: [PATCH] Fix BZ 22786: integer addition overflow may cause stack
- buffer overflow when realpath() input length is close to SSIZE_MAX.
-
-2018-05-09  Paul Pluzhnikov  <ppluzhnikov@google.com>
-
-	[BZ #22786]
-	* stdlib/canonicalize.c (__realpath): Fix overflow in path length
-	computation.
-	* stdlib/Makefile (test-bz22786): New test.
-	* stdlib/test-bz22786.c: New test.
----
- ChangeLog             |  8 +++++
- stdlib/Makefile       |  2 +-
- stdlib/canonicalize.c |  2 +-
- stdlib/test-bz22786.c | 90 +++++++++++++++++++++++++++++++++++++++++++++++++++
- 4 files changed, 100 insertions(+), 2 deletions(-)
- create mode 100644 stdlib/test-bz22786.c
-
-diff --git a/stdlib/Makefile b/stdlib/Makefile
-index af1643c..1ddb1f9 100644
---- a/stdlib/Makefile
-+++ b/stdlib/Makefile
-@@ -84,7 +84,7 @@ tests		:= tst-strtol tst-strtod testmb testrand testsort testdiv   \
- 		   tst-cxa_atexit tst-on_exit test-atexit-race 		    \
- 		   test-at_quick_exit-race test-cxa_atexit-race             \
- 		   test-on_exit-race test-dlclose-exit-race 		    \
--		   tst-makecontext-align
-+		   tst-makecontext-align test-bz22786
- 
- tests-internal	:= tst-strtod1i tst-strtod3 tst-strtod4 tst-strtod5i \
- 		   tst-tls-atexit tst-tls-atexit-nodelete
-diff --git a/stdlib/canonicalize.c b/stdlib/canonicalize.c
-index 4135f3f..390fb43 100644
---- a/stdlib/canonicalize.c
-+++ b/stdlib/canonicalize.c
-@@ -181,7 +181,7 @@ __realpath (const char *name, char *resolved)
- 		extra_buf = __alloca (path_max);
- 
- 	      len = strlen (end);
--	      if ((long int) (n + len) >= path_max)
-+	      if (path_max - n <= len)
- 		{
- 		  __set_errno (ENAMETOOLONG);
- 		  goto error;
-diff --git a/stdlib/test-bz22786.c b/stdlib/test-bz22786.c
-new file mode 100644
-index 0000000..e7837f9
---- /dev/null
-+++ b/stdlib/test-bz22786.c
-@@ -0,0 +1,90 @@
-+/* Bug 22786: test for buffer overflow in realpath.
-+   Copyright (C) 2018 Free Software Foundation, Inc.
-+   This file is part of the GNU C Library.
-+
-+   The GNU C Library is free software; you can redistribute it and/or
-+   modify it under the terms of the GNU Lesser General Public
-+   License as published by the Free Software Foundation; either
-+   version 2.1 of the License, or (at your option) any later version.
-+
-+   The GNU C Library is distributed in the hope that it will be useful,
-+   but WITHOUT ANY WARRANTY; without even the implied warranty of
-+   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+   Lesser General Public License for more details.
-+
-+   You should have received a copy of the GNU Lesser General Public
-+   License along with the GNU C Library; if not, see
-+   <http://www.gnu.org/licenses/>.  */
-+
-+/* This file must be run from within a directory called "stdlib".  */
-+
-+#include <errno.h>
-+#include <limits.h>
-+#include <stdio.h>
-+#include <stdlib.h>
-+#include <string.h>
-+#include <unistd.h>
-+#include <sys/stat.h>
-+#include <sys/types.h>
-+#include <support/test-driver.h>
-+#include <libc-diag.h>
-+
-+static int
-+do_test (void)
-+{
-+  const char dir[] = "bz22786";
-+  const char lnk[] = "bz22786/symlink";
-+
-+  rmdir (dir);
-+  if (mkdir (dir, 0755) != 0 && errno != EEXIST)
-+    {
-+      printf ("mkdir %s: %m\n", dir);
-+      return EXIT_FAILURE;
-+    }
-+  if (symlink (".", lnk) != 0 && errno != EEXIST)
-+    {
-+      printf ("symlink (%s, %s): %m\n", dir, lnk);
-+      return EXIT_FAILURE;
-+    }
-+
-+  const size_t path_len = (size_t) INT_MAX + 1;
-+
-+  DIAG_PUSH_NEEDS_COMMENT;
-+#if __GNUC_PREREQ (7, 0)
-+  /* GCC 7 warns about too-large allocations; here we need such
-+     allocation to succeed for the test to work.  */
-+  DIAG_IGNORE_NEEDS_COMMENT (7, "-Walloc-size-larger-than=");
-+#endif
-+  char *path = malloc (path_len);
-+  DIAG_POP_NEEDS_COMMENT;
-+
-+  if (path == NULL)
-+    {
-+      printf ("malloc (%zu): %m\n", path_len);
-+      return EXIT_UNSUPPORTED;
-+    }
-+
-+  /* Construct very long path = "bz22786/symlink/aaaa....."  */
-+  char *p = mempcpy (path, lnk, sizeof (lnk) - 1);
-+  *(p++) = '/';
-+  memset (p, 'a', path_len - (path - p) - 2);
-+  p[path_len - (path - p) - 1] = '\0';
-+
-+  /* This call crashes before the fix for bz22786 on 32-bit platforms.  */
-+  p = realpath (path, NULL);
-+
-+  if (p != NULL || errno != ENAMETOOLONG)
-+    {
-+      printf ("realpath: %s (%m)", p);
-+      return EXIT_FAILURE;
-+    }
-+
-+  /* Cleanup.  */
-+  unlink (lnk);
-+  rmdir (dir);
-+
-+  return 0;
-+}
-+
-+#define TEST_FUNCTION do_test
-+#include <support/test-driver.c>
--- 
-2.9.3
-

pkgs/development/libraries/glibc/CVE-2018-11237.patch

@@ -1,55 +0,0 @@
-From f51c8367685dc888a02f7304c729ed5277904aff Mon Sep 17 00:00:00 2001
-From: Andreas Schwab <schwab@suse.de>
-Date: Thu, 24 May 2018 14:39:18 +0200
-Subject: [PATCH] Don't write beyond destination in
- __mempcpy_avx512_no_vzeroupper (bug 23196)
-
-When compiled as mempcpy, the return value is the end of the destination
-buffer, thus it cannot be used to refer to the start of it.
-
-(cherry picked from commit 9aaaab7c6e4176e61c59b0a63c6ba906d875dc0e)
----
- ChangeLog                                               | 9 +++++++++
- NEWS                                                    | 7 +++++++
- string/test-mempcpy.c                                   | 1 +
- sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S | 5 +++--
- 4 files changed, 20 insertions(+), 2 deletions(-)
-
-diff --git a/string/test-mempcpy.c b/string/test-mempcpy.c
-index c08fba8..d98ecdd 100644
---- a/string/test-mempcpy.c
-+++ b/string/test-mempcpy.c
-@@ -18,6 +18,7 @@
-    <http://www.gnu.org/licenses/>.  */
- 
- #define MEMCPY_RESULT(dst, len) (dst) + (len)
-+#define MIN_PAGE_SIZE 131072
- #define TEST_MAIN
- #define TEST_NAME "mempcpy"
- #include "test-string.h"
-diff --git a/sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S b/sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S
-index 23c0f7a..effc3ac 100644
---- a/sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S
-+++ b/sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S
-@@ -336,6 +336,7 @@ L(preloop_large):
- 	vmovups	(%rsi), %zmm4
- 	vmovups	0x40(%rsi), %zmm5
- 
-+	mov	%rdi, %r11
- /* Align destination for access with non-temporal stores in the loop.  */
- 	mov	%rdi, %r8
- 	and	$-0x80, %rdi
-@@ -366,8 +367,8 @@ L(gobble_256bytes_nt_loop):
- 	cmp	$256, %rdx
- 	ja	L(gobble_256bytes_nt_loop)
- 	sfence
--	vmovups	%zmm4, (%rax)
--	vmovups	%zmm5, 0x40(%rax)
-+	vmovups	%zmm4, (%r11)
-+	vmovups	%zmm5, 0x40(%r11)
- 	jmp	L(check)
- 
- L(preloop_large_bkw):
--- 
-2.9.3
-

pkgs/development/libraries/glibc/common.nix

@@ -19,10 +19,12 @@
 
 { stdenv, lib
 , buildPackages
-, fetchurl, fetchpatch
+, fetchurl
 , linuxHeaders ? null
 , gd ? null, libpng ? null
+, libidn2
 , bison
+, python3
 }:
 
 { name
@@ -34,9 +36,9 @@
 } @ args:
 
 let
-  version = "2.27";
+  version = "2.30";
   patchSuffix = "";
-  sha256 = "0wpwq7gsm7sd6ysidv0z575ckqdg13cr2njyfgrbgh4f65adwwji";
+  sha256 = "1bxqpg91d02qnaz837a5kamm0f43pr1il4r9pknygywsar713i72";
 in
 
 assert withLinuxHeaders -> linuxHeaders != null;
@@ -92,35 +94,13 @@ stdenv.mkDerivation ({
         url = "https://salsa.debian.org/glibc-team/glibc/raw/49767c9f7de4828220b691b29de0baf60d8a54ec/debian/patches/localedata/locale-C.diff";
         sha256 = "0irj60hs2i91ilwg5w7sqrxb695c93xg0ik7yhhq9irprd7fidn4";
       })
-
-      # https://sourceware.org/git/gitweb.cgi?p=glibc.git;h=5460617d1567657621107d895ee2dd83bc1f88f2
-      ./CVE-2018-11236.patch
-      # https://sourceware.org/git/gitweb.cgi?p=glibc.git;h=f51c8367685dc888a02f7304c729ed5277904aff
-      ./CVE-2018-11237.patch
-
-      # Remove after upgrading to glibc 2.28+
-      # Change backported from upstream
-      # https://sourceware.org/git/gitweb.cgi?p=glibc.git;h=9c79cec8cd2a6996a73aa83d79b360ffd4bebde6
-      ./fix-out-of-bounds-access-in-findidxwc.patch
-
-      # Remove after upgrading to glibc 2.28+
-      # https://sourceware.org/git/gitweb.cgi?p=glibc.git;h=21526a507df8f1b2e37492193a754534d8938c0b
-      ./fix-out-of-bounds-access-in-ibm-1390-converter.patch
     ]
     ++ lib.optionals stdenv.isx86_64 [
       ./fix-x64-abi.patch
       ./2.27-CVE-2019-19126.patch
     ]
     ++ lib.optional stdenv.hostPlatform.isMusl ./fix-rpc-types-musl-conflicts.patch
-    ++ lib.optional stdenv.buildPlatform.isDarwin ./darwin-cross-build.patch
+    ++ lib.optional stdenv.buildPlatform.isDarwin ./darwin-cross-build.patch;
-
-    # Remove after upgrading to glibc 2.28+
-    ++ lib.optional (stdenv.hostPlatform != stdenv.buildPlatform || stdenv.hostPlatform.isMusl) (fetchpatch {
-      url = "https://sourceware.org/git/?p=glibc.git;a=patch;h=780684eb04298977bc411ebca1eadeeba4877833";
-      name = "correct-pwent-parsing-issue-and-resulting-build.patch";
-      sha256 = "08fja894vzaj8phwfhsfik6jj2pbji7kypy3q8pgxvsd508zdv1q";
-      excludes = [ "ChangeLog" ];
-    });
 
   postPatch =
     ''
@@ -131,6 +111,15 @@ stdenv.mkDerivation ({
       # nscd needs libgcc, and we don't want it dynamically linked
       # because we don't want it to depend on bootstrap-tools libs.
       echo "LDFLAGS-nscd += -static-libgcc" >> nscd/Makefile
+
+      # Ensure that libidn2 is found.
+      patch -p 1 <<EOF
+      --- a/inet/idna.c
+      +++ b/inet/idna.c
+      @@ -25,1 +25,1 @@
+      -#define LIBIDN2_SONAME "libidn2.so.0"
+      +#define LIBIDN2_SONAME "${lib.getLib libidn2}/lib/libidn2.so.0"
+      EOF
     '';
 
   configureFlags =
@@ -162,7 +151,7 @@ stdenv.mkDerivation ({
   outputs = [ "out" "bin" "dev" "static" ];
 
   depsBuildBuild = [ buildPackages.stdenv.cc ];
-  nativeBuildInputs = [ bison ];
+  nativeBuildInputs = [ bison python3 ];
   buildInputs = [ linuxHeaders ] ++ lib.optionals withGd [ gd libpng ];
 
   # Needed to install share/zoneinfo/zone.tab.  Set to impure /bin/sh to

pkgs/development/libraries/glibc/fix-out-of-bounds-access-in-findidxwc.patch

@@ -1,26 +0,0 @@
-diff -ur glibc-2.27/locale/weightwc.h glibc-2.27-patched/locale/weightwc.h
---- glibc-2.27/locale/weightwc.h	2018-02-02 01:17:18.000000000 +0900
-+++ glibc-2.27-patched/locale/weightwc.h	2020-01-12 04:54:16.044440602 +0900
-@@ -94,19 +94,19 @@
- 	    if (cp[cnt] != usrc[cnt])
- 	      break;
- 
--	  if (cnt < nhere - 1)
-+	  if (cnt < nhere - 1 || cnt == len)
- 	    {
- 	      cp += 2 * nhere;
- 	      continue;
- 	    }
- 
--	  if (cp[nhere - 1] > usrc[nhere -1])
-+	  if (cp[nhere - 1] > usrc[nhere - 1])
- 	    {
- 	      cp += 2 * nhere;
- 	      continue;
- 	    }
- 
--	  if (cp[2 * nhere - 1] < usrc[nhere -1])
-+	  if (cp[2 * nhere - 1] < usrc[nhere - 1])
- 	    {
- 	      cp += 2 * nhere;
- 	      continue;

pkgs/development/libraries/glibc/fix-out-of-bounds-access-in-ibm-1390-converter.patch

@@ -1,35 +0,0 @@
-From 21526a507df8f1b2e37492193a754534d8938c0b Mon Sep 17 00:00:00 2001
-From: Andreas Schwab <schwab@suse.de>
-Date: Tue, 24 Jul 2018 14:08:34 +0200
-Subject: [PATCH] Fix out-of-bounds access in IBM-1390 converter (bug 23448)
-
-The IBM-1390 converter can consume/produce two UCS4 characters in each
-loop.
----
- ChangeLog           | 6 ++++++
- iconvdata/ibm1364.c | 2 ++
- 2 files changed, 8 insertions(+)
-
-diff --git a/iconvdata/ibm1364.c b/iconvdata/ibm1364.c
-index b833273..517fe60 100644
---- a/iconvdata/ibm1364.c
-+++ b/iconvdata/ibm1364.c
-@@ -150,6 +150,7 @@ enum
- #define MIN_NEEDED_INPUT  	MIN_NEEDED_FROM
- #define MAX_NEEDED_INPUT  	MAX_NEEDED_FROM
- #define MIN_NEEDED_OUTPUT 	MIN_NEEDED_TO
-+#define MAX_NEEDED_OUTPUT 	MAX_NEEDED_TO
- #define LOOPFCT 		FROM_LOOP
- #define BODY \
-   {									      \
-@@ -296,6 +297,7 @@ enum
- 
- /* Next, define the other direction.  */
- #define MIN_NEEDED_INPUT	MIN_NEEDED_TO
-+#define MAX_NEEDED_INPUT  	MAX_NEEDED_TO
- #define MIN_NEEDED_OUTPUT	MIN_NEEDED_FROM
- #define MAX_NEEDED_OUTPUT	MAX_NEEDED_FROM
- #define LOOPFCT			TO_LOOP
--- 
-2.9.3
-

pkgs/development/libraries/gssdp/default.nix

@@ -16,13 +16,13 @@
 
 stdenv.mkDerivation rec {
   pname = "gssdp";
-  version = "1.2.1";
+  version = "1.2.2";
 
   outputs = [ "out" "bin" "dev" "devdoc" ];
 
   src = fetchurl {
     url = "mirror://gnome/sources/gssdp/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "1lsn6mdkk8yb933n0c9dka89bixvwis09w5nh5wkcag2jsdbfmvb";
+    sha256 = "195hi10vrsvh6i927mm6rm1ld5sxah3h5sr3bsjm90vb8lxrxfya";
   };
 
   nativeBuildInputs = [

pkgs/development/libraries/libdvdread/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "libdvdread";
-  version = "6.0.1";
+  version = "6.0.2";
 
   src = fetchurl {
     url = "http://get.videolan.org/libdvdread/${version}/${pname}-${version}.tar.bz2";
-    sha256 = "1gfmh8ii3s2fw1c8vn57piwxc0smd3va4h7xgp9s8g48cc04zki8";
+    sha256 = "1c7yqqn67m3y3n7nfrgrnzz034zjaw5caijbwbfrq89v46ph257r";
   };
 
   buildInputs = [libdvdcss];

pkgs/development/libraries/libffi/default.nix

@@ -1,9 +1,9 @@
 { stdenv, fetchurl, fetchpatch
 , autoreconfHook
 
-# libffi is used in darwin stdenv
+# libffi is used in darwin and linux with glibc stdenv
 # we cannot run checks within it
-, doCheck ? !stdenv.isDarwin, dejagnu
+, doCheck ? stdenv.hostPlatform.isMusl, dejagnu
 }:
 
 stdenv.mkDerivation rec {

pkgs/development/libraries/libmbim/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "libmbim";
-  version = "1.20.4";
+  version = "1.22.0";
 
   src = fetchurl {
     url = "https://www.freedesktop.org/software/libmbim/${pname}-${version}.tar.xz";
-    sha256 = "1s6k6vm4hyma7nafm1gjssl9lq9nkkiska462xpiz7xh16j0h9xc";
+    sha256 = "0f0zmbvnhdsqbf3hw5bimq67n57mhd8yad1ia823cb6i3kmph1sw";
   };
 
   outputs = [ "out" "dev" "man" ];

pkgs/development/libraries/libmilter/default.nix

@@ -31,7 +31,7 @@ stdenv.mkDerivation rec {
     sh Build -f ./a.m4
   '';
 
-  patches = [ ./install.patch ./sharedlib.patch ];
+  patches = [ ./install.patch ./sharedlib.patch ./glibc-2.30.patch ];
 
   nativeBuildInputs = [ m4 ];
 

pkgs/development/libraries/libmilter/glibc-2.30.patch

@@ -0,0 +1,44 @@
+diff --git a/libmilter/sm_gethost.c b/libmilter/sm_gethost.c
+index 2423c34..f00468c 100644
+--- a/libmilter/sm_gethost.c
++++ b/libmilter/sm_gethost.c
+@@ -52,16 +52,8 @@ sm_getipnodebyname(name, family, flags, err)
+ 	bool resv6 = true;
+ 	struct hostent *h;
+ 
+-	if (family == AF_INET6)
+-	{
+-		/* From RFC2133, section 6.1 */
+-		resv6 = bitset(RES_USE_INET6, _res.options);
+-		_res.options |= RES_USE_INET6;
+-	}
+ 	SM_SET_H_ERRNO(0);
+-	h = gethostbyname(name);
+-	if (family == AF_INET6 && !resv6)
+-		_res.options &= ~RES_USE_INET6;
++	h = gethostbyname2(name, family);
+ 
+ 	/* the function is supposed to return only the requested family */
+ 	if (h != NULL && h->h_addrtype != family)
+diff --git a/sendmail/conf.c b/sendmail/conf.c
+index c73334e..500dafb 100644
+--- a/sendmail/conf.c
++++ b/sendmail/conf.c
+@@ -4243,16 +4243,8 @@ sm_getipnodebyname(name, family, flags, err)
+ # else /* HAS_GETHOSTBYNAME2 */
+ 	bool resv6 = true;
+ 
+-	if (family == AF_INET6)
+-	{
+-		/* From RFC2133, section 6.1 */
+-		resv6 = bitset(RES_USE_INET6, _res.options);
+-		_res.options |= RES_USE_INET6;
+-	}
+ 	SM_SET_H_ERRNO(0);
+-	h = gethostbyname(name);
+-	if (!resv6)
+-		_res.options &= ~RES_USE_INET6;
++	h = gethostbyname2(name, family);
+ 
+ 	/* the function is supposed to return only the requested family */
+ 	if (h != NULL && h->h_addrtype != family)

pkgs/development/libraries/libqmi/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "libqmi";
-  version = "1.24.0";
+  version = "1.24.2";
 
   src = fetchurl {
     url = "https://www.freedesktop.org/software/libqmi/${pname}-${version}.tar.xz";
-    sha256 = "0yccw97pqn8afy96k5ssk7qi6r3wjshcnxk14k77qikkqa89zdmf";
+    sha256 = "10mjfmiznaxvfk0f9wr18kyxz3mpdrvnh0qw9g8c1nv0z5vf9r2a";
   };
 
   outputs = [ "out" "dev" "devdoc" ];

pkgs/development/libraries/libunistring/default.nix

@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
     "--with-libiconv-prefix=${libiconv}"
   ];
 
-  doCheck = true;
+  doCheck = false;
 
   /* This seems to cause several random failures like these, which I assume
      is because of bad or missing target dependencies in their build system:

pkgs/development/libraries/libzip/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "libzip";
-  version = "1.5.2";
+  version = "1.6.0";
 
   src = fetchurl {
     url = "https://www.nih.at/libzip/${pname}-${version}.tar.gz";
-    sha256 = "05ay8cbm882br0ir2cmzrvdq8q5mr1bnf53l4305xzigpd54lsdy";
+    sha256 = "1zsspz6cbbqah11jkcc894jgxihlm8gicfh54yvny9gc3lsvpi3h";
   };
 
   # Fix pkgconfig file paths

pkgs/development/libraries/seasocks/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, cmake, python, zlib }:
+{ stdenv, fetchFromGitHub, cmake, python, zlib, fetchpatch }:
 
 stdenv.mkDerivation rec {
   pname = "seasocks";
@@ -11,6 +11,13 @@ stdenv.mkDerivation rec {
     sha256 = "1c2gc0k9wgbgn7y7wmq2ylp0gvdbmagc1x8c4jwbsncl1gy6x4g2";
   };
 
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/mattgodbolt/seasocks/commit/5753b50ce3b2232d166843450043f88a4a362422.patch";
+      sha256 = "1c20xjma8jdgcr5m321srpmys6b4jvqkazfqr668km3r2ck5xncl";
+    })
+  ];
+
   nativeBuildInputs = [ cmake ];
   buildInputs = [ zlib python ];
 

pkgs/development/libraries/snappy/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "snappy";
-  version = "1.1.7";
+  version = "1.1.8";
 
   src = fetchFromGitHub {
     owner = "google";
     repo = "snappy";
     rev = version;
-    sha256 = "1x7r8sjmdqlqjz0xfiwdyrqpgaj5yrvrgb28ivgpvnxgar5qv6m2";
+    sha256 = "1j0kslq2dvxgkcxl1gakhvsa731yrcvcaipcp5k8k7ayicvkv9jv";
   };
 
   patches = [ ./disable-benchmark.patch ];

pkgs/development/perl-modules/MooseXAttributeHelpers-perl-5.20.patch

@@ -1,33 +0,0 @@
-diff --git a/t/003_basic_hash.t b/t/003_basic_hash.t
-index 1f842ae..c21ac52 100644
---- a/t/003_basic_hash.t
-+++ b/t/003_basic_hash.t
-@@ -170,10 +170,10 @@ is_deeply($options->provides, {
- is($options->type_constraint->type_parameter, 'Str', '... got the right container type');
- 
- $stuff->set_option( oink => "blah", xxy => "flop" );
--my @key_value = $stuff->key_value;
-+my @key_value = sort{ $a->[0] cmp $b->[0] } $stuff->key_value;
- is_deeply(
-     \@key_value,
--    [ [ 'xxy', 'flop' ], [ 'quantity', 4 ], [ 'oink', 'blah' ] ],
-+    [ sort{ $a->[0] cmp $b->[0] } [ 'xxy', 'flop' ], [ 'quantity', 4 ], [ 'oink', 'blah' ] ],
-     '... got the right key value pairs'
- );
- 
-diff --git a/t/203_trait_hash.t b/t/203_trait_hash.t
-index 8e876b1..451c0bb 100644
---- a/t/203_trait_hash.t
-+++ b/t/203_trait_hash.t
-@@ -156,10 +156,10 @@ is_deeply($options->provides, {
- is($options->type_constraint->type_parameter, 'Str', '... got the right container type');
- 
- $stuff->set_option( oink => "blah", xxy => "flop" );
--my @key_value = $stuff->key_value;
-+my @key_value = sort{ $a->[0] cmp $b->[0] } $stuff->key_value;
- is_deeply(
-     \@key_value,
--    [ [ 'xxy', 'flop' ], [ 'quantity', 4 ], [ 'oink', 'blah' ] ],
-+    [ sort{ $a->[0] cmp $b->[0] } [ 'xxy', 'flop' ], [ 'quantity', 4 ], [ 'oink', 'blah' ] ],
-     '... got the right key value pairs'
- );

pkgs/development/tools/analysis/coz/default.nix

@@ -16,6 +16,10 @@ stdenv.mkDerivation rec {
     sha256 = "0val36yw987b1558iiyk3nqg0yy5k9y5wh49v91zj3cs58mmfyhc";
   };
 
+  postPatch = ''
+    sed -i -e '/pid_t gettid/,+2d' libcoz/ccutil/thread.h
+  '';
+
   postConfigure = ''
     # This is currently hard-coded. Will be fixed in the next release.
     sed -e "s|/usr/lib/|$out/lib/|" -i ./coz

pkgs/development/tools/analysis/eresi/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchFromGitHub, which, openssl, readline }:
+{ stdenv, lib, fetchFromGitHub, which, openssl, readline, fetchpatch }:
 
 stdenv.mkDerivation rec {
   pname = "eresi";
@@ -11,6 +11,13 @@ stdenv.mkDerivation rec {
     sha256 = "0a5a7mh2zw9lcdrl8n1mqccrc0xcgj7743l7l4kslkh722fxv625";
   };
 
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/thorkill/eresi/commit/a79406344cc21d594d27fa5ec5922abe9f7475e7.patch";
+      sha256 = "1mjjc6hj7r06iarvai7prcdvjk9g0k5vwrmkwcm7b8ivd5xzxp2z";
+    })
+  ];
+
   postPatch = ''
     # Two occurences of fprintf() with only two arguments, which should really
     # be fputs().

pkgs/development/tools/analysis/rr/default.nix

@@ -1,14 +1,14 @@
-{ stdenv, fetchFromGitHub, cmake, libpfm, zlib, pkgconfig, python2Packages, which, procps, gdb, capnproto }:
+{ stdenv, fetchFromGitHub, cmake, libpfm, zlib, pkgconfig, python3Packages, which, procps, gdb, capnproto }:
 
 stdenv.mkDerivation rec {
-  version = "5.2.0";
+  version = "5.3.0";
   pname = "rr";
 
   src = fetchFromGitHub {
     owner = "mozilla";
     repo = "rr";
     rev = version;
-    sha256 = "19jsnm8n2smalx2z60x9d8f6g4kdm7zghwyjfvwcxnslk1vn9dkc";
+    sha256 = "1x6l1xsdksnhz9v50p4r7hhmr077cq20kaywqy1jzdklvkjqzf64";
   };
 
   postPatch = ''
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [
-    cmake libpfm zlib python2Packages.python python2Packages.pexpect which procps gdb capnproto
+    cmake libpfm zlib python3Packages.python python3Packages.pexpect which procps gdb capnproto
   ];
   propagatedBuildInputs = [ gdb ]; # needs GDB to replay programs at runtime
   cmakeFlags = [

pkgs/development/tools/gnulib/default.nix

@@ -2,12 +2,12 @@
 
 stdenv.mkDerivation {
   pname = "gnulib";
-  version = "20190326";
+  version = "20190811";
 
   src = fetchgit {
     url = https://git.savannah.gnu.org/r/gnulib.git;
-    rev = "a18f7ce3c0aa760c33d46bbeb8e5b3a14cf24984";
+    rev = "6430babe47ece6953cf18ef07c1d8642c8588e89";
-    sha256 = "04py5n3j17wyqv9wfsslcrxzapni9vmw6p5g0adzy2md3ygjw4x4";
+    sha256 = "14kgykbjly03dlb25sllcfcrpk7zkypa449gr3zbqv4rhpmnzizg";
   };
 
   dontFixup = true;

pkgs/development/tools/misc/gnum4/default.nix

@@ -13,7 +13,14 @@ stdenv.mkDerivation {
   configureFlags = [ "--with-syscmd-shell=${stdenv.shell}" ];
 
   # Upstream is aware of it; it may be in the next release.
-  patches = [ ./s_isdir.patch ]
+  patches =
+    [
+      ./s_isdir.patch
+      (fetchurl {
+        url = "https://sources.debian.org/data/main/m/m4/1.4.18-2/debian/patches/01-fix-ftbfs-with-glibc-2.28.patch";
+        sha256 = "12lmdnbml9lfvy0khpjc42riicddaz7li8wmbnsam7zsw6al11qk";
+      })
+    ]
     ++ stdenv.lib.optional stdenv.isDarwin ./darwin-secure-format.patch;
 
   meta = {

pkgs/development/tools/misc/intel-gpu-tools/default.nix

@@ -1,20 +1,21 @@
 { stdenv, fetchurl, pkgconfig, libdrm, libpciaccess, cairo, xorgproto, udev
 , libX11, libXext, libXv, libXrandr, glib, bison, libunwind, python3, kmod
-, procps, utilmacros, gtk-doc, openssl, peg }:
+, procps, utilmacros, gtk-doc, openssl, peg, elfutils
+}:
 
 stdenv.mkDerivation rec {
   pname = "intel-gpu-tools";
-  version = "1.23";
+  version = "1.24";
 
   src = fetchurl {
     url = "https://xorg.freedesktop.org/archive/individual/app/igt-gpu-tools-${version}.tar.xz";
-    sha256 = "1l4s95m013p2wvddwr4cjqyvsgmc88zxx2887p1fbb1va5n0hjsd";
+    sha256 = "1gr1m18w73hmh6n9w2f6gky21qc0pls14bgxkhy95z7azrr7qdap";
   };
 
   nativeBuildInputs = [ pkgconfig utilmacros ];
   buildInputs = [ libdrm libpciaccess cairo xorgproto udev libX11 kmod
     libXext libXv libXrandr glib bison libunwind python3 procps
-    gtk-doc openssl peg ];
+    gtk-doc openssl peg elfutils ];
 
   NIX_CFLAGS_COMPILE = [ "-Wno-error=array-bounds" ];
 

pkgs/os-specific/linux/drbd/default.nix

@@ -8,7 +8,7 @@ stdenv.mkDerivation rec {
     sha256 = "1w4889h1ak7gy9w33kd4fgjlfpgmp6hzfya16p1pkc13bjf22mm0";
   };
 
-  patches = [ ./pass-force.patch ];
+  patches = [ ./pass-force.patch ./fix-glibc-compilation.patch ];
 
   nativeBuildInputs = [ flex ];
   buildInputs = [ perl ];

pkgs/os-specific/linux/drbd/fix-glibc-compilation.patch

@@ -0,0 +1,24 @@
+diff --git a/user/drbdadm_adjust.c b/user/drbdadm_adjust.c
+index cb23270..3a751ca 100644
+--- a/user/drbdadm_adjust.c
++++ b/user/drbdadm_adjust.c
+@@ -29,6 +29,7 @@
+ #include <sys/types.h>
+ #include <sys/stat.h>
+ #include <sys/wait.h>
++#include <sys/sysmacros.h>
+ #include <unistd.h>
+ #include <fcntl.h>
+ 
+diff --git a/user/legacy/drbdadm_adjust.c b/user/legacy/drbdadm_adjust.c
+index c79163c..6990ffb 100644
+--- a/user/legacy/drbdadm_adjust.c
++++ b/user/legacy/drbdadm_adjust.c
+@@ -27,6 +27,7 @@
+ #include <sys/types.h>
+ #include <sys/stat.h>
+ #include <sys/wait.h>
++#include <sys/sysmacros.h>
+ #include <unistd.h>
+ #include <fcntl.h>
+ 

pkgs/os-specific/linux/jfbview/default.nix

@@ -24,6 +24,11 @@ stdenv.mkDerivation rec {
     sha256 = "0ppns49hnmp04zdjw6wc28v0yvz31rkzvd5ylcj7arikx20llpxf";
   };
 
+  postPatch = ''
+    substituteInPlace main.cpp \
+      --replace "<stropts.h>" "<sys/ioctl.h>"
+  '';
+
   hardeningDisable = [ "format" ];
 
   buildInputs = [

pkgs/os-specific/linux/policycoreutils/default.nix

@@ -15,6 +15,8 @@ stdenv.mkDerivation rec {
     substituteInPlace po/Makefile \
        --replace /usr/bin/install install --replace /usr/share /share
     substituteInPlace newrole/Makefile --replace /usr/share /share
+
+    sed -i -e '39i#include <crypt.h>' run_init/run_init.c
   '';
 
   nativeBuildInputs = [ gettext ];

pkgs/os-specific/linux/sysstat/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl, gettext, bzip2 }:
 
 stdenv.mkDerivation rec {
-  name = "sysstat-12.1.7";
+  name = "sysstat-12.2.0";
 
   src = fetchurl {
     url = "http://pagesperso-orange.fr/sebastien.godard/${name}.tar.xz";
-    sha256 = "1i0qy44krl1gj82izgmqa0zdw82f2gmqzlslvdg5v270vl7i24g7";
+    sha256 = "0xc3983ccr0dwab1px2jhbgj86pfmmr29k7ggnwjwm1qigmriak1";
   };
 
   buildInputs = [ gettext ];

pkgs/os-specific/linux/tiscamera/allow-pipeline-stop-in-trigger-mode.patch

@@ -1,48 +0,0 @@
-diff --git a/src/gstreamer-1.0/gsttcamsrc.cpp b/src/gstreamer-1.0/gsttcamsrc.cpp
-index d482e1e..e36afd8 100644
---- a/src/gstreamer-1.0/gsttcamsrc.cpp
-+++ b/src/gstreamer-1.0/gsttcamsrc.cpp
-@@ -1112,6 +1112,7 @@ bool gst_tcam_src_init_camera (GstTcamSrc* self)
- 
- static void gst_tcam_src_close_camera (GstTcamSrc* self)
- {
-+    GST_INFO("Closing device");
-     if (self->device != NULL)
-     {
-         self->device->dev->stop_stream();
-@@ -1156,7 +1157,7 @@ static gboolean gst_tcam_src_stop (GstBaseSrc* src)
- 
-     self->device->dev->stop_stream();
-     gst_element_send_event(GST_ELEMENT(self), gst_event_new_eos());
--    GST_DEBUG_OBJECT (self, "Stopped acquisition");
-+    GST_DEBUG("Stopped acquisition");
- 
-     return TRUE;
- }
-@@ -1556,6 +1557,18 @@ static void gst_tcam_src_get_property (GObject* object,
- }
- 
- 
-+static gboolean gst_tcam_src_unlock (GstBaseSrc* src)
-+{
-+    GstTcamSrc* self = GST_TCAM_SRC(src);
-+
-+    self->is_running = FALSE;
-+
-+    self->cv.notify_all();
-+
-+    return TRUE;
-+}
-+
-+
- static void gst_tcam_src_class_init (GstTcamSrcClass* klass)
- {
-     GObjectClass *gobject_class = G_OBJECT_CLASS (klass);
-@@ -1616,6 +1629,7 @@ static void gst_tcam_src_class_init (GstTcamSrcClass* klass)
-     gstbasesrc_class->fixate = gst_tcam_src_fixate_caps;
-     gstbasesrc_class->start = gst_tcam_src_start;
-     gstbasesrc_class->stop = gst_tcam_src_stop;
-+    gstbasesrc_class->unlock = gst_tcam_src_unlock;
-     gstbasesrc_class->negotiate = gst_tcam_src_negotiate;
-     gstbasesrc_class->get_times = gst_tcam_src_get_times;
- 

pkgs/os-specific/linux/tiscamera/default.nix

@@ -11,17 +11,23 @@
 , gobject-introspection
 , gst_all_1
 , libwebcam
+, libunwind
+, gstreamer
+, elfutils
+, orc
+, python3
+, libuuid
 }:
 
 stdenv.mkDerivation rec {
   pname = "tiscamera";
-  version = "0.9.1";
+  version = "0.11.1";
 
   src = fetchFromGitHub {
     owner = "TheImagingSource";
     repo = pname;
     rev = "v-${pname}-${version}";
-    sha256 = "143yp6bpzj3rqfnrcnlrcwggay37fg6rkphh4w9y9v7v4wllzf87";
+    sha256 = "07vp6khgl6qd3a4519dmx1s5bfw7pld793p50pjn29fqh91fm93g";
   };
 
   nativeBuildInputs = [
@@ -39,6 +45,12 @@ stdenv.mkDerivation rec {
     gst_all_1.gstreamer
     gst_all_1.gst-plugins-base
     libwebcam
+    libunwind
+    gstreamer
+    elfutils
+    orc
+    python3
+    libuuid
   ];
 
 
@@ -50,13 +62,8 @@ stdenv.mkDerivation rec {
     "-DBUILD_LIBUSB=ON"
   ];
 
-
-  patches = [
-    ./allow-pipeline-stop-in-trigger-mode.patch # To be removed next release.
-  ];
-
   postPatch = ''
-    substituteInPlace ./data/udev/80-theimagingsource-cameras.rules \
+    substituteInPlace ./data/udev/80-theimagingsource-cameras.rules.in \
       --replace "/usr/bin/uvcdynctrl" "${libwebcam}/bin/uvcdynctrl" \
       --replace "/path/to/tiscamera/uvc-extensions" "$out/share/uvcdynctrl/data/199e"
 
@@ -94,4 +101,4 @@ stdenv.mkDerivation rec {
     platforms = platforms.linux;
     maintainers = with maintainers; [ jraygauthier ];
   };
-}
+}

pkgs/os-specific/linux/v4l-utils/default.nix

@@ -12,11 +12,11 @@ let
 # we need to use stdenv.mkDerivation in order not to pollute the libv4l’s closure with Qt
 in stdenv.mkDerivation rec {
   pname = "v4l-utils";
-  version = "1.16.7";
+  version = "1.18.0";
 
   src = fetchurl {
     url = "https://linuxtv.org/downloads/${pname}/${pname}-${version}.tar.bz2";
-    sha256 = "1ng0x3wj3a1ckfd00yxa4za43xms92gdp7rdag060b7p39z7m4gf";
+    sha256 = "03c80acbv2znfxs1l32yx30znmjrqq7kxhiwl2309lpf5s10vdkc";
   };
 
   outputs = [ "out" ] ++ lib.optional withUtils "lib" ++ [ "dev" ];

pkgs/servers/diod/default.nix

@@ -13,6 +13,7 @@ stdenv.mkDerivation rec {
 
   postPatch = ''
     substituteInPlace diod/xattr.c --replace attr/xattr.h sys/xattr.h
+    sed -i -e '/sys\/types\.h>/a #include <sys/sysmacros.h>' diod/ops.c
   '';
 
   buildInputs = [ munge lua libcap perl ncurses ];

pkgs/servers/foundationdb/default.nix

@@ -24,6 +24,11 @@ let
     sha256 = "11y434w68cpk7shs2r22hyrpcrqi8vx02cw7v5x79qxvnmdxv2an";
   };
 
+  glibc230-fix = fetchpatch {
+    url = "https://github.com/Ma27/foundationdb/commit/e133cb974b9a9e4e1dc2d4ac15881d31225c0197.patch";
+    sha256 = "1v9q2fyc73msigcykjnbmfig45zcrkrzcg87b0r6mxpnby8iryl1";
+  };
+
 in with builtins; {
 
   # Older versions use the bespoke 'vsmake' build system
@@ -78,6 +83,7 @@ in with builtins; {
     patches = [
       ./patches/clang-libcxx.patch
       ./patches/suppress-clang-warnings.patch
+      glibc230-fix
     ];
   };
 

pkgs/servers/gpsd/default.nix

@@ -42,6 +42,10 @@ stdenv.mkDerivation rec {
     ./0002-scons-envs-patch.patch
   ];
 
+  postPatch = ''
+    sed -i -e '17i#include <sys/sysmacros.h>' serial.c
+  '';
+
   # - leapfetch=no disables going online at build time to fetch leap-seconds
   #   info. See <gpsd-src>/build.txt for more info.
   preBuild = ''

pkgs/servers/http/lwan/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "lwan";
-  version = "0.2";
+  version = "0.3";
 
   src = fetchFromGitHub {
     owner = "lpereira";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1z1g6bmdsf7zj809sq6jqkpzkdnx1jch84kk67h0v2x6lxhdpv5r";
+    sha256 = "1znkcsbxw3r10prqvf2x27w1wmm9kd485pj59c364wlvqdhidwqr";
   };
 
   nativeBuildInputs = [ cmake pkgconfig ];

pkgs/servers/mail/postfix/0001-Fix-build-with-glibc-2.30.patch

@@ -0,0 +1,34 @@
+From a6a61d0dc018101a9a8d0a664f31140d7e38db0e Mon Sep 17 00:00:00 2001
+From: Maximilian Bosch <maximilian@mbosch.me>
+Date: Fri, 17 Jan 2020 01:42:40 +0100
+Subject: [PATCH] Fix build with glibc 2.30
+
+https://bugs.launchpad.net/ubuntu/+source/postfix/+bug/1842923
+---
+ src/dns/dns_str_resflags.c | 6 ++++++
+ 1 file changed, 6 insertions(+)
+
+diff --git a/src/dns/dns_str_resflags.c b/src/dns/dns_str_resflags.c
+index 5f2cce5..df32345 100644
+--- a/src/dns/dns_str_resflags.c
++++ b/src/dns/dns_str_resflags.c
+@@ -60,10 +60,16 @@ static const LONG_NAME_MASK resflag_table[] = {
+     "RES_DEFNAMES", RES_DEFNAMES,
+     "RES_STAYOPEN", RES_STAYOPEN,
+     "RES_DNSRCH", RES_DNSRCH,
++#ifdef RES_INSECURE1
+     "RES_INSECURE1", RES_INSECURE1,
++#endif
++#ifdef RES_INSECURE2
+     "RES_INSECURE2", RES_INSECURE2,
++#endif
+     "RES_NOALIASES", RES_NOALIASES,
++#ifdef RES_USE_INET6
+     "RES_USE_INET6", RES_USE_INET6,
++#endif
+ #ifdef RES_ROTATE
+     "RES_ROTATE", RES_ROTATE,
+ #endif
+-- 
+2.23.1
+

pkgs/servers/mail/postfix/default.nix

@@ -48,6 +48,7 @@ in stdenv.mkDerivation rec {
     ./postfix-3.0-no-warnings.patch
     ./post-install-script.patch
     ./relative-symlinks.patch
+    ./0001-Fix-build-with-glibc-2.30.patch
   ];
 
   postPatch = stdenv.lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) ''

pkgs/servers/prayer/default.nix

@@ -35,6 +35,7 @@ stdenv.mkDerivation rec {
       Config
     sed -i -e s,/usr/bin/perl,${perl}/bin/perl, \
       templates/src/*.pl
+    sed -i -e '/<stropts.h>/d' lib/os_linux.h
   '' + /* html-tidy updates */ ''
     substituteInPlace ./session/html_secure_tidy.c \
       --replace buffio.h tidybuffio.h

pkgs/servers/x11/xorg/overrides.nix

@@ -182,6 +182,16 @@ self: super:
     propagatedBuildInputs = [ self.libXrender freetype fontconfig ];
     configureFlags = attrs.configureFlags or []
       ++ malloc0ReturnsNullCrossFlag;
+
+    patches = [
+      # Adds color emoji rendering support.
+      # https://gitlab.freedesktop.org/xorg/lib/libxft/merge_requests/1
+      (fetchpatch {
+        url = "https://gitlab.freedesktop.org/xorg/lib/libxft/commit/fe41537b5714a2301808eed2d76b2e7631176573.patch";
+        sha256 = "045lp1q50i2wlwvpsq6ycxdc6p3asm2r3bk2nbad1dwkqw2xf9jc";
+      })
+    ];
+
     # the include files need ft2build.h, and Requires.private isn't enough for us
     postInstall = ''
       sed "/^Requires:/s/$/, freetype2/" -i "$dev/lib/pkgconfig/xft.pc"

pkgs/stdenv/linux/bootstrap-files/aarch64.nix

@@ -1,11 +1,11 @@
 {
   busybox = import <nix/fetchurl.nix> {
-    url = http://nixos-arm.dezgeg.me/bootstrap-aarch64-2017-03-11-bb3ef8/busybox;
+    url = http://tarballs.nixos.org/stdenv-linux/aarch64/bb3ef8a95c9659596b8a34d27881cd30ffea2f9f/busybox;
     sha256 = "12qcml1l67skpjhfjwy7gr10nc86gqcwjmz9ggp7knss8gq8pv7f";
     executable = true;
   };
   bootstrapTools = import <nix/fetchurl.nix> {
-    url = http://nixos-arm.dezgeg.me/bootstrap-aarch64-2017-03-11-bb3ef8/bootstrap-tools.tar.xz;
+    url = http://tarballs.nixos.org/stdenv-linux/aarch64/c5aabb0d603e2c1ea05f5a93b3be82437f5ebf31/bootstrap-tools.tar.xz;
-    sha256 = "1075d5n4yclbhgisi6ba50601mw3fhivlkjs462qlnq8hh0xc7nq";
+    sha256 = "d3f1bf2a1495b97f45359d5623bdb1f8eb75db43d3bf2059fc127b210f059358";
   };
 }

pkgs/stdenv/linux/bootstrap-files/i686.nix

@@ -6,7 +6,7 @@
   };
 
   bootstrapTools = import <nix/fetchurl.nix> {
-    url = http://tarballs.nixos.org/stdenv-linux/i686/4907fc9e8d0d82b28b3c56e3a478a2882f1d700f/bootstrap-tools.tar.xz;
+    url = http://tarballs.nixos.org/stdenv-linux/i686/c5aabb0d603e2c1ea05f5a93b3be82437f5ebf31/bootstrap-tools.tar.xz;
-    sha256 = "cf920d26d94335f5cb46e247455d0e5389765d16a2b8fc233b792a655b5b58aa";
+    sha256 = "b9bf20315f8c5c0411679c5326084420b522046057a0850367c67d9514794f1c";
   };
 }

pkgs/stdenv/linux/bootstrap-files/x86_64.nix

@@ -3,7 +3,7 @@
 
 {
   bootstrapTools = import <nix/fetchurl.nix> {
-    url = http://tarballs.nixos.org/stdenv-linux/x86_64/4907fc9e8d0d82b28b3c56e3a478a2882f1d700f/bootstrap-tools.tar.xz;
+    url = http://tarballs.nixos.org/stdenv-linux/x86_64/c5aabb0d603e2c1ea05f5a93b3be82437f5ebf31/bootstrap-tools.tar.xz;
-    sha256 = "abe3f0727dd771a60b7922892d308da1bc7b082afc13440880862f0c8823c09f";
+    sha256 = "a5ce9c155ed09397614646c9717fc7cd94b1023d7b76b618d409e4fefd6e9d39";
   };
 }

pkgs/stdenv/linux/default.nix

@@ -226,6 +226,28 @@ in
         ccWrapperStdenv
         gcc-unwrapped coreutils gnugrep
         perl gnum4 bison;
+      dejagnu = super.dejagnu.overrideAttrs (a: { doCheck = false; } );
+
+      # We need libidn2 and its dependency libunistring as glibc dependency.
+      # To avoid the cycle, we build against bootstrap libc, nuke references,
+      # and use the result as input for our final glibc.  We also pass this pair
+      # through, so the final package-set uses exactly the same builds.
+      libunistring = super.libunistring.overrideAttrs (attrs: {
+        postFixup = attrs.postFixup or "" + ''
+          ${self.nukeReferences}/bin/nuke-refs "$out"/lib/lib*.so.*.*
+        '';
+        # Apparently iconv won't work with bootstrap glibc, but it will be used
+        # with glibc built later where we keep *this* build of libunistring,
+        # so we need to trick it into supporting libiconv.
+        am_cv_func_iconv_works = "yes";
+      });
+      libidn2 = super.libidn2.overrideAttrs (attrs: {
+        postFixup = attrs.postFixup or "" + ''
+          ${self.nukeReferences}/bin/nuke-refs -e '${lib.getLib self.libunistring}' \
+            "$out"/lib/lib*.so.*.*
+        '';
+      });
+
       # This also contains the full, dynamically linked, final Glibc.
       binutils = prevStage.binutils.override {
         # Rewrap the binutils with the new glibc, so both the next
@@ -246,7 +268,7 @@ in
       inherit (prevStage)
         ccWrapperStdenv
         binutils coreutils gnugrep
-        perl patchelf linuxHeaders gnum4 bison;
+        perl patchelf linuxHeaders gnum4 bison libidn2 libunistring;
       ${localSystem.libc} = getLibc prevStage;
       # Link GCC statically against GMP etc.  This makes sense because
       # these builds of the libraries are only used by GCC, so it
@@ -276,7 +298,7 @@ in
       # because gcc (since JAR support) already depends on zlib, and
       # then if we already have a zlib we want to use that for the
       # other purposes (binutils and top-level pkgs) too.
-      inherit (prevStage) gettext gnum4 bison gmp perl texinfo zlib linuxHeaders;
+      inherit (prevStage) gettext gnum4 bison gmp perl texinfo zlib linuxHeaders libidn2 libunistring;
       ${localSystem.libc} = getLibc prevStage;
       binutils = super.binutils.override {
         # Don't use stdenv's shell but our own
@@ -362,7 +384,7 @@ in
           ]
         # Library dependencies
         ++ map getLib (
-            [ attr acl zlib pcre ]
+            [ attr acl zlib pcre libidn2 libunistring ]
             ++ lib.optional (gawk.libsigsegv != null) gawk.libsigsegv
           )
         # More complicated cases
@@ -377,7 +399,7 @@ in
         inherit (prevStage)
           gzip bzip2 xz bash coreutils diffutils findutils gawk
           gnumake gnused gnutar gnugrep gnupatch patchelf
-          attr acl zlib pcre;
+          attr acl zlib pcre libunistring libidn2;
         ${localSystem.libc} = getLibc prevStage;
       } // lib.optionalAttrs (super.stdenv.targetPlatform == localSystem) {
         # Need to get rid of these when cross-compiling.

pkgs/tools/archivers/sharutils/default.nix

@@ -25,6 +25,10 @@ stdenv.mkDerivation rec {
       url = "https://sources.debian.org/data/main/s/sharutils/1:4.15.2-2+deb9u1/debian/patches/01-fix-heap-buffer-overflow-cve-2018-1000097.patch";
       sha256 = "19g0sxc8g79aj5gd5idz5409311253jf2q8wqkasf0handdvsbxx";
     })
+    (fetchurl {
+      url = "https://sources.debian.org/data/main/s/sharutils/1:4.15.2-4/debian/patches/02-fix-ftbfs-with-glibc-2.28.patch";
+      sha256 = "15kpjqnfs98n6irmkh8pw7masr08xala7gx024agv7zv14722vkc";
+    })
   ];
 
   postPatch = let

pkgs/tools/compression/bzip2/default.nix

@@ -1,5 +1,6 @@
 { stdenv, fetchurl
 , linkStatic ? (stdenv.hostPlatform.system == "i686-cygwin")
+, autoreconfHook
 }:
 
 stdenv.mkDerivation rec {
@@ -20,6 +21,8 @@ stdenv.mkDerivation rec {
     sha256 = "0b5b5p8c7bslc6fslcr1nj9136412v3qcvbg6yxi9argq9g72v8c";
   };
 
+  nativeBuildInputs = [ autoreconfHook ];
+
   patches = [
     ./CVE-2016-3189.patch
     ./cve-2019-12900.patch

pkgs/tools/filesystems/e2fsprogs/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "e2fsprogs";
-  version = "1.45.4";
+  version = "1.45.5";
 
   src = fetchurl {
     url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.gz";
-    sha256 = "0jsclghxfzj9qmdd3qqk0gdmkrgjv2gakf8qz9dba37qkj1nk776";
+    sha256 = "1n8ffss5044j9382rlvmhyr1f6kmnfjfbv6q4jbbh8gfdwpjmrwi";
   };
 
   outputs = [ "bin" "dev" "out" "man" "info" ];

pkgs/tools/filesystems/ext4magic/default.nix

@@ -14,6 +14,7 @@ stdenv.mkDerivation rec {
         url = https://sourceforge.net/p/ext4magic/tickets/10/attachment/ext4magic-0.3.2-i_dir_acl.patch;
         sha256 = "1accydd8kigid68yir2fbihm3r3x8ws3iyznp25snkx41w6y6x8c";
     })
+    ./glibc-fix.patch
   ];
 
   buildInputs = [ file libuuid e2fsprogs zlib bzip2 ];

pkgs/tools/filesystems/ext4magic/glibc-fix.patch

@@ -0,0 +1,12 @@
+diff --git a/src/recover.c b/src/recover.c
+index 41b4aee..30b5d8f 100644
+--- a/src/recover.c
++++ b/src/recover.c
+@@ -24,6 +24,7 @@
+ #include <errno.h>
+ #include <fcntl.h>
+ #include <utime.h>
++#include <sys/sysmacros.h>
+ 
+ #ifndef O_LARGEFILE
+ #define O_LARGEFILE 0

pkgs/tools/filesystems/jfsutils/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, libuuid, autoreconfHook }:
+{ stdenv, fetchurl, fetchpatch, libuuid, autoreconfHook }:
 
 stdenv.mkDerivation rec {
   name = "jfsutils-1.1.15";
@@ -13,6 +13,12 @@ stdenv.mkDerivation rec {
     ./hardening-format.patch
     # required for cross-compilation
     ./ar-fix.patch
+    # fix for glibc>=2.28
+    (fetchpatch {
+      name   = "add_sysmacros.patch";
+      url    = "https://sources.debian.org/data/main/j/jfsutils/1.1.15-4/debian/patches/add_sysmacros.patch";
+      sha256 = "1qcwvxs4d0d24w5x98z59arqfx2n7f0d9xaqhjcg6w8n34vkhnyc";
+    })
   ];
 
   nativeBuildInputs = [ autoreconfHook ];

pkgs/tools/filesystems/udftools/default.nix

@@ -24,6 +24,7 @@ stdenv.mkDerivation rec {
     sed -e '38i#include <string.h>' -i wrudf/wrudf-cdrw.c
     sed -e '12i#include <string.h>' -i wrudf/wrudf-cdr.c
     sed -e '37i#include <stdlib.h>' -i wrudf/ide-pc.c
+    sed -e '46i#include <sys/sysmacros.h>' -i mkudffs/main.c
 
     sed -e "s@\$(DESTDIR)/lib/udev/rules.d@$out/lib/udev/rules.d@" -i pktsetup/Makefile.am
   '';

pkgs/tools/misc/expect/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, tcl, makeWrapper }:
+{ stdenv, fetchurl, tcl, makeWrapper, autoreconfHook }:
 
 stdenv.mkDerivation rec {
   version = "5.45.4";
@@ -10,11 +10,11 @@ stdenv.mkDerivation rec {
   };
 
   buildInputs = [ tcl ];
-  nativeBuildInputs = [ makeWrapper ];
+  nativeBuildInputs = [ makeWrapper autoreconfHook ];
 
   hardeningDisable = [ "format" ];
 
-  patchPhase = ''
+  postPatch = ''
     sed -i "s,/bin/stty,$(type -p stty),g" configure
   '';
 

pkgs/tools/misc/idutils/default.nix

@@ -50,5 +50,6 @@ stdenv.mkDerivation rec {
 
     maintainers = [ ];
     platforms = stdenv.lib.platforms.all;
+    broken = true;
   };
 }

pkgs/tools/misc/kermit/default.nix

@@ -35,5 +35,6 @@ stdenv.mkDerivation {
     license = licenses.bsd3;
     maintainers = with maintainers; [ pSub ];
     platforms = with platforms; linux;
+    broken = true;
   };
 }

pkgs/tools/misc/ttyrec/default.nix

@@ -26,5 +26,6 @@ stdenv.mkDerivation rec {
     license = licenses.bsd3;
     platforms = platforms.all;
     maintainers = with maintainers; [ zimbatm ];
+    broken = true; # 2020-01-28
   };
 }

pkgs/tools/networking/dhcp/default.nix

@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   pname = "dhcp";
-  version = "4.4.1";
+  version = "4.4.2";
 
   src = fetchurl {
     url = "https://ftp.isc.org/isc/dhcp/${version}/${pname}-${version}.tar.gz";
-    sha256 = "025nfqx4zwdgv4b3rkw26ihcj312vir08jk6yi57ndmb4a4m08ia";
+    sha256 = "08a5003zdxgl41b29zjkxa92h2i40zyjgxg0npvnhpkfl5jcsz0s";
   };
 
   patches =

pkgs/tools/networking/gftp/default.nix

@@ -8,6 +8,10 @@ stdenv.mkDerivation {
     sha256 = "1z8b26n23k0sjbxgrix646b06cnpndpq7cbcj0ilsvvdx5ms81jk";
   };
 
+  postPatch = ''
+    sed -i -e '/<stropts.h>/d' lib/pty.c
+  '';
+
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [ gtk2 readline ncurses gettext openssl ];
 

pkgs/tools/networking/openresolv/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "openresolv";
-  version = "3.9.2";
+  version = "3.10.0";
 
   src = fetchurl {
     url = "mirror://roy/openresolv/${pname}-${version}.tar.xz";
-    sha256 = "0wyk9sl1xgvxjvj1v3nlgs79nykdr0b76k5zp3v6cm9fd10y5mql";
+    sha256 = "01ms6c087la4hk0f0w6n2vpsb7dg4kklah2rqyhz88p0vr9bqy20";
   };
 
   buildInputs = [ makeWrapper ];

pkgs/tools/networking/ppp/default.nix

@@ -10,10 +10,17 @@ stdenv.mkDerivation rec {
   };
 
   patches =
-    [ ( substituteAll {
+    [
+      # fix for glibc>=2.28
+      (fetchurl {
+        url = "https://github.com/paulusmack/ppp/commit/3c7b86229f7bd2600d74db14b1fe5b3896be3875.patch";
+        sha256 = "0qlbi247lx3injpy8a1gcij9yilik0vfaibkpvdp88k3sa1rs69z";
+      })
+      ( substituteAll {
         src = ./nix-purity.patch;
         inherit libpcap;
         glibc = stdenv.cc.libc.dev or stdenv.cc.libc;
+        openssl = openssl.dev;
       })
       # Without nonpriv.patch, pppd --version doesn't work when not run as
       # root.

pkgs/tools/networking/ppp/nix-purity.patch

@@ -1,8 +1,8 @@
 diff --git a/pppd/Makefile.linux b/pppd/Makefile.linux
-index 060db6a..c151c62 100644
+index 1ebebec..bf90c62 100644
 --- a/pppd/Makefile.linux
 +++ b/pppd/Makefile.linux
-@@ -117,7 +117,7 @@ CFLAGS   += -DHAS_SHADOW
+@@ -120,7 +120,7 @@ CFLAGS   += -DHAS_SHADOW
  #LIBS     += -lshadow $(LIBS)
  endif
  
@@ -11,7 +11,16 @@ index 060db6a..c151c62 100644
  CFLAGS  += -DHAVE_CRYPT_H=1
  LIBS	+= -lcrypt
  endif
-@@ -169,7 +169,7 @@ LIBS	+= -ldl
+@@ -132,7 +132,7 @@ endif
+ 
+ ifdef NEEDDES
+ ifndef USE_CRYPT
+-CFLAGS   += -I/usr/include/openssl
++CFLAGS   += -I@openssl@/include/openssl
+ LIBS     += -lcrypto
+ else
+ CFLAGS   += -DUSE_CRYPT=1
+@@ -178,7 +178,7 @@ LIBS	+= -ldl
  endif
  
  ifdef FILTER

pkgs/tools/networking/xnbd/0001-Fix-build-for-glibc-2.28.patch

@@ -0,0 +1,25 @@
+From e799a7e0a64696e4ef6c088d36e4db09f8323581 Mon Sep 17 00:00:00 2001
+From: Maximilian Bosch <maximilian@mbosch.me>
+Date: Sun, 19 Jan 2020 22:37:04 +0100
+Subject: [PATCH] Fix build for glibc>=2.28
+
+The major/minor macros are defined in <sys/sysmacros.h> now.
+---
+ lib/io.h | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/lib/io.h b/lib/io.h
+index 8703cc8..e3d0d10 100644
+--- a/lib/io.h
++++ b/lib/io.h
+@@ -33,6 +33,7 @@
+ #include <sys/types.h>
+ #include <sys/stat.h>
+ #include <sys/mman.h>
++#include <sys/sysmacros.h>
+ 
+ 
+ void read_all(int fd, void *buf, size_t len);
+-- 
+2.23.1
+

pkgs/tools/networking/xnbd/default.nix

@@ -10,6 +10,8 @@ stdenv.mkDerivation rec {
 
   sourceRoot = "${name}/trunk";
 
+  patches = [ ./0001-Fix-build-for-glibc-2.28.patch ];
+
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
 
   buildInputs = [ glib jansson ];

pkgs/tools/security/oath-toolkit/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitLab, pam, xmlsec, autoreconfHook, pkgconfig, libxml2, gtk-doc, perl, gengetopt, bison, help2man }:
+{ stdenv, fetchFromGitLab, fetchpatch, pam, xmlsec, autoreconfHook, pkgconfig, libxml2, gtk-doc, perl, gengetopt, bison, help2man }:
 
 let
   securityDependency =
@@ -15,6 +15,15 @@ in stdenv.mkDerivation {
     sha256 = "0n2sl444723f1k0sjmc0mzdwslx51yxac39c2cx2bl3ykacgfv74";
   };
 
+  patches = [
+    # fix for glibc>=2.28
+    (fetchpatch {
+      name   = "new_glibc_check.patch";
+      url    = "https://sources.debian.org/data/main/o/oath-toolkit/2.6.1-1.3/debian/patches/new-glibc-check.patch";
+      sha256 = "0h75xyy3xsl485v7w27yqkks6z9sgsjmrv6wiswy15fdj5wyciv3";
+    })
+  ];
+
   buildInputs = [ securityDependency libxml2 perl gengetopt bison ];
 
   nativeBuildInputs = [ autoreconfHook gtk-doc help2man pkgconfig ];

pkgs/top-level/all-packages.nix

@@ -8123,6 +8123,8 @@ in
     # PGO seems to speed up compilation by gcc by ~10%, see #445 discussion
     profiledCompiler = with stdenv; (!isDarwin && (isi686 || isx86_64));
 
+    enableLTO = !stdenv.isi686;
+
     libcCross = if stdenv.targetPlatform != stdenv.buildPlatform then libcCross else null;
     threadsCross = if stdenv.targetPlatform != stdenv.buildPlatform then threadsCross else null;
 
@@ -24486,6 +24488,8 @@ in
 
   pspp = callPackage ../applications/science/math/pspp { };
 
+  ssw = callPackage ../applications/misc/ssw { };
+
   pynac = callPackage ../applications/science/math/pynac { };
 
   singular = callPackage ../applications/science/math/singular { };