r-modules: update list of broken packages
Closes https://github.com/NixOS/nixpkgs/pull/12181.
This commit is contained in:
Michel Kuhlmann
Peter Simons
parent
7941e1c457
commit
26f80d7a6f
@ -735,6 +735,7 @@ let
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"aop" # broken build
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"apaTables" # depends on broken package r-car-2.1-0
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"apComplex" # build is broken
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"apex" # depends on broken package Biostrings-2.38.2
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"apmsWAPP" # broken build
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"apt" # depends on broken package nlopt-2.4.2
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"ArfimaMLM" # depends on broken package nlopt-2.4.2
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@ -752,6 +753,7 @@ let
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"AssetPricing" # broken build
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"AtelieR" # broken build
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"attract" # depends on broken package AnnotationForge-1.11.3
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"auRoc" # depends on broken package rjags-4-4
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"AutoModel" # depends on broken package r-car-2.1-0
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"babel" # broken build
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"BACA" # depends on broken package Category-2.35.1
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@ -781,6 +783,7 @@ let
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"BcDiag" # broken build
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"BCRANK" # broken build
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"bcrypt"
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"bdynsys" # depends on broken package car-2.1
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"beadarray" # broken build
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"beadarrayFilter" # broken build
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"beadarrayMSV" # broken build
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@ -838,7 +841,9 @@ let
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"BradleyTerry2" # depends on broken package nlopt-2.4.2
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"BrailleR" # broken build
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"BRAIN" # broken build
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"brainGraph" # build is broken
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"BrainStars" # broken build
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"brms" # build is broken
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"BrowserViz" # broken build
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"BrowserVizDemo" # broken build
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"brr" # broken build
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@ -929,14 +934,17 @@ let
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"cnvGSA" # broken build
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"CNVPanelizer" # depends on broken cn.mops-1.15.1
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"CNVrd2" # depends on broken package Rsamtools-1.21.8
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"coalescentMCMC" # depends on broken package Biostrings-2.38.2
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"cobindR" # depends on broken package Rsamtools-1.21.8
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"CoCiteStats" # Build Is Broken
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"codelink" # broken build
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"CODEX" # depends on broken package Rsamtools-1.21.8
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"coefplot" # build is broken
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"cogena" # broken build
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"COHCAP" # build is broken
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"colorscience"
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"coMET" # depends on broken package Rsamtools-1.21.8
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"CommT" # depends on broken package Biostrings-2.38.2
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"compcodeR" # broken build
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"compendiumdb" # broken build
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"compEpiTools" # depends on broken package topGO-2.21.0
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@ -947,6 +955,7 @@ let
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"convert" # broken build
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"convevol" # broken build
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"copa" # broken build
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"CopulaDTA" # depends on broken package r-rstan-2.8.2
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"CopyNumber450k" # depends on broken package Rsamtools-1.21.8
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"copynumber" # broken build
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"CopywriteR" # depends on broken package Rsamtools-1.21.8
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@ -962,6 +971,7 @@ let
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"cpgen" # depends on broken package r-pedigreemm-0.3-3
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"cplexAPI" # build is broken
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"cpvSNP" # depends on broken package Rsamtools-1.21.8
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"cquad" # depends on broken package car-2.1-1
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"creditr" # broken build
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"CRImage" # broken build
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"CRISPRseek" # depends on broken package Rsamtools-1.21.8
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@ -1013,6 +1023,7 @@ let
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"derfinder" # depends on broken package Rsamtools-1.21.8
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"derfinderHelper" # broken build
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"derfinderPlot" # depends on broken package Rsamtools-1.21.8
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"DescribeDisplay" # build is broken
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"DESeq2" # broken build
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"DESeq" # broken build
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"DESP" # broken build
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@ -1030,6 +1041,7 @@ let
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"discSurv" # depends on broken package nlopt-2.4.2
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"DistatisR" # depends on broken package nlopt-2.4.2
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"diveRsity" # depends on broken package nlopt-2.4.2
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"DJL" # depends on broken package r-car-2.1-0
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"DMRcaller" # broken build
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"DMRcate" # depends on broken package Rsamtools-1.21.8
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"DMRforPairs" # depends on broken package Rsamtools-1.21.8
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@ -1056,6 +1068,7 @@ let
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"EBarrays" # broken build
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"EBcoexpress" # broken build
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"EBImage" # broken build
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"ecd" # depends on broken package r-polynom-1.3-8
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"ecolitk" # broken build
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"EDASeq" # depends on broken package Rsamtools-1.21.8
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"EDDA" # broken build
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@ -1090,6 +1103,7 @@ let
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"erpR" # depends on broken package rpanel-1.1-3
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"ESKNN" # depends on broken package r-caret-6.0-52
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"eulerian" # broken build
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"euroMix" # build is broken
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"evobiR" # broken build
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"evolqg" # broken build
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"ExiMiR" # depends on broken package affyio-1.37.0
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@ -1099,6 +1113,7 @@ let
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"ExpressionView" # depends on broken package Category-2.35.1
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"extRemes" # depends on broken package nlopt-2.4.2
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"ez" # depends on broken package nlopt-2.4.2
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"ezec" # depends on broken package drc-2.5
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"fabia" # broken build
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"facopy" # depends on broken package nlopt-2.4.2
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"factDesign" # broken build
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@ -1156,6 +1171,7 @@ let
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"frma" # depends on broken package affyio-1.37.0
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"frmaTools" # depends on broken package affyio-1.37.0
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"frmqa" # broken build
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"FSA" # depends on broken package car-2.1-1
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"fscaret" # depends on broken package nlopt-2.4.2
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"fulltext" # broken build
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"FunciSNP" # depends on broken package snpStats-1.19.0
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@ -1223,6 +1239,8 @@ let
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"gfcanalysis" # broken build
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"GGBase" # depends on broken package snpStats-1.19.0
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"ggbio" # depends on broken package Rsamtools-1.21.8
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"ggsubplot" # build is broken
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"ggtern" # build is broken
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"GGtools" # depends on broken package snpStats-1.19.0
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"ggtree" # broken build
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"gimme" # depends on broken package nlopt-2.4.2
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@ -1266,6 +1284,7 @@ let
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"gRc" # broken build
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"GreyListChIP" # depends on broken package Rsamtools-1.21.8
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"gridDebug" # broken build
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"gridGraphics" # build is broken
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"gridGraphviz" # broken build
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"gRim" # broken build
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"groHMM" # depends on broken package Rsamtools-1.21.8
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@ -1333,6 +1352,7 @@ let
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"iBMQ" # broken build
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"iccbeta" # depends on broken package nlopt-2.4.2
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"iCheck" # depends on broken package r-affy-1.48.0
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"iClick" # depends on broken package rugarch-1.3-6
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"IdeoViz" # depends on broken package Rsamtools-1.21.8
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"idiogram" # broken build
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"IdMappingAnalysis" # broken build
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@ -1444,6 +1464,7 @@ let
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"maPredictDSC" # depends on broken package nlopt-2.4.2
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"mar1s" # broken build
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"marked" # depends on broken package nlopt-2.4.2
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"markophylo" # depends on broken package r-Biostrings-2.38.2
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"maSigPro" # broken build
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"maskBAD" # depends on broken package affyio-1.37.0
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"massiR" # broken build
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@ -1455,6 +1476,7 @@ let
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"mbest" # depends on broken package nlopt-2.4.2
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"MBmca" # depends on broken nloptr-1.0.4
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"mBPCR" # depends on broken package affyio-1.37.0
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"mBvs" # build is broken
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"mcaGUI" # depends on broken package Rsamtools-1.21.8
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"MCRestimate" # build is broken
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"mdgsa" # build is broken
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@ -1482,6 +1504,7 @@ let
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"metagene" # depends on broken package Rsamtools-1.21.8
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"metagenomeFeatures" # depends on broken package r-Biobase-2.30.0
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"metagenomeSeq" # broken build
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"metaheur" # depends on broken package r-preprocomb-0.2.0
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"MetaLandSim" # broken build
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"metamisc"
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"metaMix" # build is broken
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@ -1531,6 +1554,7 @@ let
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"mitoODE" # build is broken
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"mixAK" # depends on broken package nlopt-2.4.2
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"MixedPoisson" # broken build
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"MIXFIM" # build is broken
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"mixlm" # depends on broken package nlopt-2.4.2
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"MixMAP" # depends on broken package nlopt-2.4.2
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"MLInterfaces" # broken build
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@ -1607,6 +1631,7 @@ let
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"netbenchmark" # build is broken
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"netClass" # broken build
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"nethet" # broken build
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"NetPreProc" # depends on broken package graph-1.48.0
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"netresponse" # broken build
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"NetSAM" # broken build
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"nettools" # depends on broken package WGCNA-1.47
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@ -1631,6 +1656,7 @@ let
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"oligoClasses" # depends on broken package affyio-1.37.0
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"oligo" # depends on broken package affyio-1.37.0
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"OmicCircos" # broken build
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"omics" # depends on broken package lme4-1.1-10
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"OmicsMarkeR" # depends on broken package nlopt-2.4.2
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"OncoSimulR" # broken build
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"oneChannelGUI" # depends on broken package affyio-1.37.0
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@ -1707,7 +1733,9 @@ let
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"pequod" # depends on broken package nlopt-2.4.2
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"PerfMeas" # broken build
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"PGA" # depends on broken package Rsamtools-1.21.8
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"pglm" # depends on broken package car-2.1-1
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"PGSEA" # depends on broken package annaffy-1.41.1
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"phangorn" # depends on broken package Biostrings-2.38.2
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"PharmacoGx"
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"phenoDist" # depends on broken package Category-2.35.1
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"phenoTest" # depends on broken package Category-2.35.1
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@ -1716,6 +1744,7 @@ let
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"phreeqc" # broken build
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"phylocurve" # depends on broken package nlopt-2.4.2
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"phyloseq" # broken build
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"PhySortR" # depends on broken package phytools-0.5-10
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"phytools" # broken build
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"piano" # broken build
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"PICS" # depends on broken package Rsamtools-1.21.8
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@ -1727,6 +1756,7 @@ let
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"plfMA" # broken build
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"plgem" # broken build
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"plier" # depends on broken package affyio-1.37.0
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"plm" # depends on broken package car-2.1-1
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"PLPE" # broken build
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"plrs" # broken build
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"plsRbeta" # depends on broken package nlopt-2.4.2
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@ -1740,6 +1770,8 @@ let
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"Polyfit" # broken build
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"polynom" # broken build
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"pomp" # depends on broken package nlopt-2.4.2
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"poppr" # depends on broken package Biostrings-2.38.2
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"popprxl" # depends on broken package Biostrings-2.38.2
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"ppiPre" # depends on broken package GOSemSim-1.27.3
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"ppiStats" # depends on broken package Category-2.35.1
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"prada" # broken build
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@ -1810,6 +1842,7 @@ let
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"RAM" # broken build
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"RamiGO" # depends on broken package RCytoscape-1.19.0
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"randPack" # broken build
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"RANKS" # depends on broken package graph-1.48.0
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"RapidPolygonLookup" # depends on broken package PBSmapping-2.69.76
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"RAPIDR" # depends on broken package Rsamtools-1.21.8
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"RareVariantVis" # depends on broken VariantAnnotation-1.15.19
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@ -1830,6 +1863,7 @@ let
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"rCGH" # depends on broken package r-affy-1.47.1
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"Rchemcpp" # depends on broken package ChemmineR-2.21.7
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"rchess" # depends on broken package r-V8-0.9
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"Rchoice" # depends on broken package car-2.1
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"RchyOptimyx" # broken build
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"Rcmdr" # depends on broken package nlopt-2.4.2
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"RcmdrMisc" # depends on broken package nlopt-2.4.2
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@ -1898,6 +1932,7 @@ let
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"regioneR" # depends on broken package Rsamtools-1.21.8
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"regionReport" # depends on broken package Rsamtools-1.21.8
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"regRSM" # broken build
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"REndo" # depends on broken package AER-1.2-4
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"repijson" # depends on broken package V8-0.6
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"Repitools" # depends on broken package affyio-1.37.0
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"ReportingTools" # depends on broken package Category-2.35.1
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@ -1935,6 +1970,7 @@ let
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"rminer" # depends on broken package nlopt-2.4.2
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"RmiR" # Build Is Broken
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"Rmosek" # build is broken
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"rmumps" # build is broken
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"RMySQL" # broken build
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"RNAinteract" # depends on broken package Category-2.35.1
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"RNAither" # depends on broken package nlopt-2.4.2
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@ -1979,6 +2015,7 @@ let
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"RSeed" # broken build
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"rSFFreader" # depends on broken package Rsamtools-1.21.8
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"Rsomoclu"
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"rstan" # build is broken
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"RStoolbox" # depends on broken package r-caret-6.0-52
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"Rsubread" # Build Is Broken
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"RSVSim" # depends on broken package Rsamtools-1.21.8
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@ -2040,6 +2077,7 @@ let
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"SeqFeatR" # broken build
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"SeqGrapheR" # Build Is Broken
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"SeqGSEA" # broken build
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"seqHMM" # depends on broken package nloptr-1.0.4
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"seqPattern" # broken build
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"seqplots" # depends on broken package Rsamtools-1.21.8
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"seqTools" # build is broken
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@ -2112,6 +2150,7 @@ let
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"spliceR" # depends on broken package Rsamtools-1.21.8
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"spliceSites" # broken build
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"SplicingGraphs" # depends on broken package Rsamtools-1.21.8
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"splm" # depends on broken package car-2.1-1
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"spocc" # depends on broken package V8-0.6
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"spoccutils" # depends on broken spocc-0.3.0
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"spsann" # depends on broken package r-pedometrics-0.6-2
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@ -2142,9 +2181,12 @@ let
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"Surrogate" # depends on broken package nlopt-2.4.2
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"Sushi" # broken build
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"sva" # broken build
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"svglite" # depends on broken package gdtools-0.0.6
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"SVM2CRM" # depends on broken package Rsamtools-1.21.8
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"sybilSBML" # build is broken
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"synapter" # depends on broken package affyio-1.37.0
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"synchronicity" # build is broken
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"synthpop" # build is broken
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"systemfit" # depends on broken package nlopt-2.4.2
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"systemPipeR" # depends on broken package AnnotationForge-1.11.3
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"TargetSearch" # depends on broken package mzR-2.3.1
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@ -2157,12 +2199,14 @@ let
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"TDMR" # depends on broken package nlopt-2.4.2
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"TED" # broken build
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"TEQC" # depends on broken package Rsamtools-1.21.8
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"TextoMineR" # depends on broken package FactoMineR-1.31.4
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"TFBSTools" # depends on broken package DirichletMultinomial-1.11.1
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"tigerstats" # depends on broken package nlopt-2.4.2
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"tigre" # broken build
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"tilingArray" # depends on broken package affyio-1.37.0
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"timecourse" # broken build
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"timeSeq" # broken build
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"timetree" # depends on broken package Biostrings-2.38.2
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"TIN" # depends on broken package WGCNA-1.47
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"TitanCNA" # depends on broken package Rsamtools-1.21.8
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"TKF" # broken build
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@ -2180,6 +2224,7 @@ let
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"tRanslatome" # depends on broken package GOSemSim-1.27.3
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"TransView" # depends on broken package Rsamtools-1.21.8
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"traseR"
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"treescape" # depends on broken package Biostrings-2.38.2
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"triform" # broken build
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"trigger" # broken build
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"TriMatch" # depends on broken package nlopt-2.4.2
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@ -2206,6 +2251,7 @@ let
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"V8" # build is broken
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"VanillaICE" # depends on broken package affyio-1.37.0
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"varComp" # depends on broken package r-lme4-1.1-9
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"varian" # build is broken
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"variancePartition" # depends on broken package lme4-1.1-8
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"VariantAnnotation" # depends on broken package Rsamtools-1.21.8
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"VariantFiltering" # depends on broken package Rsamtools-1.21.8
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@ -2223,6 +2269,7 @@ let
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"wavClusteR" # depends on broken package Rsamtools-1.21.8
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"waveTiling" # depends on broken package affyio-1.37.0
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"webbioc" # depends on broken package affyio-1.37.0
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"webp" # build is broken
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"wfe" # depends on broken package nlopt-2.4.2
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"WGCNA" # build is broken
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"wgsea" # depends on broken package snpStats-1.19.0
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@ -2236,6 +2283,7 @@ let
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"xps" # build is broken
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"XVector" # broken build
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"yaqcaffy" # depends on broken package affyio-1.37.0
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"yCrypticRNAs" # depends on broken package biomaRt-2.26.1
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"ZeligChoice" # depends on broken package r-AER-1.2-4
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"Zelig" # depends on broken package r-AER-1.2-4
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"ZeligMultilevel" # depends on broken package nlopt-2.4.2
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