2021-01-25 08:26:54 +00:00
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{ lib, python3Packages }:
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2018-08-29 15:27:05 +01:00
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2019-11-12 23:46:56 +00:00
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python3Packages.buildPythonApplication rec {
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2018-08-29 15:27:05 +01:00
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pname = "snakemake";
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2021-03-26 22:32:26 +00:00
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version = "6.0.5";
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2018-08-29 15:27:05 +01:00
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2019-11-12 23:46:56 +00:00
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propagatedBuildInputs = with python3Packages; [
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2018-08-29 15:27:05 +01:00
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appdirs
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ConfigArgParse
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datrie
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docutils
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2021-03-26 22:32:26 +00:00
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filelock
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2019-04-10 19:18:26 +01:00
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GitPython
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2018-08-29 15:27:05 +01:00
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jsonschema
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2020-03-14 20:59:46 +00:00
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nbformat
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2019-11-12 23:46:56 +00:00
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psutil
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2020-11-17 22:37:35 +00:00
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pulp
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2018-08-29 15:27:05 +01:00
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pyyaml
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ratelimiter
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requests
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2021-03-26 22:32:26 +00:00
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smart_open
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2020-03-14 20:59:46 +00:00
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toposort
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2018-08-29 15:27:05 +01:00
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wrapt
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];
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2019-11-12 23:46:56 +00:00
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src = python3Packages.fetchPypi {
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2018-08-29 15:27:05 +01:00
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inherit pname version;
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2021-03-26 22:32:26 +00:00
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sha256 = "9441169034cce46086a8b45486d75175db645b932e766d28fed312ec837792d3";
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2018-08-29 15:27:05 +01:00
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};
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doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json
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2021-01-11 07:54:33 +00:00
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meta = with lib; {
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2021-03-26 22:32:26 +00:00
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homepage = "https://snakemake.github.io";
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2018-08-29 15:27:05 +01:00
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license = licenses.mit;
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description = "Python-based execution environment for make-like workflows";
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longDescription = ''
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Snakemake is a workflow management system that aims to reduce the complexity of
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creating workflows by providing a fast and comfortable execution environment,
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together with a clean and readable specification language in Python style. Snakemake
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workflows are essentially Python scripts extended by declarative code to define
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rules. Rules describe how to create output files from input files.
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'';
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2020-03-14 20:59:46 +00:00
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maintainers = with maintainers; [ helkafen renatoGarcia veprbl ];
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2018-08-29 15:27:05 +01:00
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};
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}
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