nixpkgs/pkgs/tools/misc/hdf5/default.nix

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{ stdenv
, fetchurl
, removeReferencesTo
, cpp ? false
, gfortran ? null
, zlib ? null
, szip ? null
, mpi ? null
, enableShared ? true
}:
# cpp and mpi options are mutually exclusive
# (--enable-unsupported could be used to force the build)
assert !cpp || mpi == null;
let inherit (stdenv.lib) optional optionals; in
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stdenv.mkDerivation rec {
hdf5-threadsafe: 1.10.1 -> 1.10.2 Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/hdf5-threadsafe/versions. These checks were done: - built on NixOS - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5import -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5import -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5perf_serial help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5cc --help’ got 0 exit code - found 1.10.2 with grep in /nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2 - directory tree listing: https://gist.github.com/aedb29e367d0b709b77bbdc794b96dd6
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version = "1.10.2";
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name = "hdf5-${version}";
src = fetchurl {
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url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/${name}/src/${name}.tar.bz2";
hdf5-threadsafe: 1.10.1 -> 1.10.2 Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/hdf5-threadsafe/versions. These checks were done: - built on NixOS - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5diff --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5ls --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5dump --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5mkgrp --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5clear --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5import -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5import -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5repack --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5jam -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5unjam -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5copy --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5format_convert --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat -h’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat --help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat -V’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5stat --version’ and found version 1.10.2 - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5perf_serial help’ got 0 exit code - ran ‘/nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2/bin/h5cc --help’ got 0 exit code - found 1.10.2 with grep in /nix/store/29yg9dx5p3ppcvyz7fk2lb14hmmy2slj-hdf5-1.10.2 - directory tree listing: https://gist.github.com/aedb29e367d0b709b77bbdc794b96dd6
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sha256 = "0wfb3w6dzi6zr2g1sdswqy9lxbp7yr4blvyi7k2xya7izmxmpb8w";
};
passthru = {
mpiSupport = (mpi != null);
inherit mpi;
};
nativeBuildInputs = [ removeReferencesTo ];
buildInputs = []
++ optional (gfortran != null) gfortran
++ optional (szip != null) szip;
propagatedBuildInputs = []
++ optional (zlib != null) zlib
++ optional (mpi != null) mpi;
configureFlags = []
++ optional cpp "--enable-cxx"
++ optional (gfortran != null) "--enable-fortran"
++ optional (szip != null) "--with-szlib=${szip}"
++ optionals (mpi != null) ["--enable-parallel" "CC=${mpi}/bin/mpicc"]
++ optional enableShared "--enable-shared";
patches = [./bin-mv.patch];
postInstall = ''
find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' +
'';
meta = {
description = "Data model, library, and file format for storing and managing data";
longDescription = ''
HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient
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I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
'';
license = stdenv.lib.licenses.free; # BSD-like
homepage = https://www.hdfgroup.org/HDF5/;
platforms = stdenv.lib.platforms.unix;
broken = (gfortran != null) && stdenv.isDarwin;
};
}