2017-09-01 20:42:52 +01:00
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{ stdenv, fetchFromGitHub, cmake, gcc, zlib, bzip2, lzma }:
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2016-12-17 05:36:53 +00:00
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stdenv.mkDerivation rec {
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name = "freebayes-${version}";
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2017-09-01 20:42:52 +01:00
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version = "2017-08-23";
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2016-12-17 05:36:53 +00:00
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src = fetchFromGitHub {
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name = "freebayes-${version}-src";
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owner = "ekg";
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repo = "freebayes";
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2017-09-01 20:42:52 +01:00
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rev = "8d2b3a060da473e1f4f89be04edfce5cba63f1d3";
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sha256 = "0yyrgk2639lz1yvg4jf0ccahnkic31dy77q05pb3i28rjf37v45z";
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2016-12-17 05:36:53 +00:00
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fetchSubmodules = true;
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};
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2017-09-27 23:52:58 +01:00
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buildInputs = [ zlib bzip2 lzma ];
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2016-12-17 05:36:53 +00:00
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2017-09-27 23:52:58 +01:00
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installPhase = ''
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install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin
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'';
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2016-12-17 05:36:53 +00:00
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meta = with stdenv.lib; {
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description = "Bayesian haplotype-based polymorphism discovery and genotyping";
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license = licenses.mit;
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homepage = https://github.com/ekg/freebayes;
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maintainers = with maintainers; [ jdagilliland ];
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platforms = [ "x86_64-linux" ];
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};
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}
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