39 lines
1.1 KiB
Nix
39 lines
1.1 KiB
Nix
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{ stdenv, cmake, rocksdb, rapidjson, pkgconfig, fetchFromGitHub, fetchpatch, zlib }:
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stdenv.mkDerivation rec {
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pname = "sortmerna";
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version = "3.0.3";
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src = fetchFromGitHub {
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repo = pname;
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owner = "biocore";
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rev = "v${version}";
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sha256 = "0zx5fbzyr8wdr0zwphp8hhcn1xz43s5lg2ag4py5sv0pv5l1jh76";
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};
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patches = [
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(fetchpatch {
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name = "CMakeInstallPrefix.patch";
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url = "https://github.com/biocore/sortmerna/commit/4d36d620a3207e26cf3f588d4ec39889ea21eb79.patch";
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sha256 = "0hc3jwdr6ylbyigg52q8islqc0mb1k8rrjadvjfqaxnili099apd";
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})
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];
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nativeBuildInputs = [ cmake rapidjson pkgconfig ];
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buildInputs = [ zlib rocksdb rapidjson ];
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cmakeFlags = [
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"-DCMAKE_BUILD_TYPE=Release"
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"-DROCKSDB_HOME=${rocksdb}"
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"-DRAPIDJSON_HOME=${rapidjson}"
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];
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meta = with stdenv.lib; {
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description = "Tools for filtering, mapping, and OTU-picking from shotgun genomics data";
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license = licenses.lgpl3;
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platforms = platforms.x86_64;
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homepage = https://bioinfo.lifl.fr/RNA/sortmerna/;
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maintainers = with maintainers; [ luispedro ];
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};
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}
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