2021-09-26 14:33:31 +01:00
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{ lib
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, stdenv
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2010-08-02 09:58:53 +01:00
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, fetchurl
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2017-09-28 08:09:16 +01:00
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, removeReferencesTo
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2021-09-26 14:33:31 +01:00
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, cppSupport ? false
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, fortranSupport ? false
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, fortran
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, zlibSupport ? true
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, zlib
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, szipSupport ? false
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, szip
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2021-01-10 12:40:19 +00:00
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, mpiSupport ? false
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, mpi
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2020-12-20 06:11:26 +00:00
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, enableShared ? !stdenv.hostPlatform.isStatic
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2021-02-16 22:24:14 +00:00
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, javaSupport ? false
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, jdk
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2021-04-04 12:05:19 +01:00
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, usev110Api ? false
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2010-08-02 09:58:53 +01:00
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}:
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2015-11-11 14:14:28 +00:00
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2015-11-20 09:59:22 +00:00
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# cpp and mpi options are mutually exclusive
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# (--enable-unsupported could be used to force the build)
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2021-09-26 14:33:31 +01:00
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assert !cppSupport || !mpiSupport;
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2015-11-20 09:59:22 +00:00
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2021-01-15 09:19:50 +00:00
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let inherit (lib) optional optionals; in
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2015-11-11 14:14:28 +00:00
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2014-06-15 10:59:58 +01:00
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stdenv.mkDerivation rec {
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2021-07-11 10:43:41 +01:00
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version = "1.12.1";
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2019-08-15 13:41:18 +01:00
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pname = "hdf5";
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2010-08-02 09:58:53 +01:00
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src = fetchurl {
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2021-03-25 12:03:33 +00:00
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url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${lib.versions.majorMinor version}/${pname}-${version}/src/${pname}-${version}.tar.bz2";
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2021-07-11 10:43:41 +01:00
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sha256 = "sha256-qvn1MrPtqD09Otyfi0Cpt2MVIhj6RTScO8d1Asofjxw=";
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2019-02-21 13:04:05 +00:00
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};
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2014-06-15 10:12:03 +01:00
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2014-07-01 14:55:12 +01:00
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passthru = {
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2021-09-26 14:33:31 +01:00
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inherit
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cppSupport
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fortranSupport
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fortran
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zlibSupport
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zlib
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szipSupport
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szip
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mpiSupport
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mpi
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;
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2014-07-01 14:55:12 +01:00
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};
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2019-09-25 16:13:12 +01:00
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outputs = [ "out" "dev" ];
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2021-09-03 12:33:34 +01:00
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nativeBuildInputs = [ removeReferencesTo ]
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2021-09-26 14:33:31 +01:00
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++ optional fortranSupport fortran;
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2017-09-28 08:09:16 +01:00
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2021-09-26 14:33:31 +01:00
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buildInputs = optional fortranSupport fortran
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++ optional szipSupport szip
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2021-02-16 22:24:14 +00:00
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++ optional javaSupport jdk;
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2014-06-15 12:26:44 +01:00
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2021-09-26 14:33:31 +01:00
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propagatedBuildInputs = optional zlibSupport zlib
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2021-01-10 12:40:19 +00:00
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++ optional mpiSupport mpi;
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2015-11-11 14:14:28 +00:00
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2021-09-26 14:33:31 +01:00
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configureFlags = optional cppSupport "--enable-cxx"
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++ optional fortranSupport "--enable-fortran"
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++ optional szipSupport "--with-szlib=${szip}"
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++ optionals mpiSupport [ "--enable-parallel" "CC=${mpi}/bin/mpicc" ]
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2021-02-16 22:24:14 +00:00
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++ optional enableShared "--enable-shared"
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2021-04-04 12:05:19 +01:00
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++ optional javaSupport "--enable-java"
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++ optional usev110Api "--with-default-api-version=v110";
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2015-11-11 14:14:28 +00:00
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2019-02-21 13:04:05 +00:00
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patches = [
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./bin-mv.patch
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2021-11-06 18:59:58 +00:00
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# Avoid non-determinism in autoconf build system:
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# - build time
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# - build user
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# - uname -a (kernel version)
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# Can be dropped once/if we switch to cmake.
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./hdf5-more-determinism.patch
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2019-02-21 13:04:05 +00:00
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];
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2015-11-11 14:14:28 +00:00
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2017-09-28 08:09:16 +01:00
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postInstall = ''
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find "$out" -type f -exec remove-references-to -t ${stdenv.cc} '{}' +
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2019-09-27 11:53:14 +01:00
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moveToOutput 'bin/h5cc' "''${!outputDev}"
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moveToOutput 'bin/h5c++' "''${!outputDev}"
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moveToOutput 'bin/h5fc' "''${!outputDev}"
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moveToOutput 'bin/h5pcc' "''${!outputDev}"
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2017-09-28 08:09:16 +01:00
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'';
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2010-08-02 09:58:53 +01:00
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meta = {
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2013-10-06 10:49:53 +01:00
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description = "Data model, library, and file format for storing and managing data";
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2010-08-02 09:58:53 +01:00
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longDescription = ''
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2013-10-06 10:49:53 +01:00
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HDF5 supports an unlimited variety of datatypes, and is designed for flexible and efficient
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2017-11-17 22:14:31 +00:00
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I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing
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applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and
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2010-08-02 09:58:53 +01:00
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applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
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'';
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2021-01-15 09:19:50 +00:00
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license = lib.licenses.bsd3; # Lawrence Berkeley National Labs BSD 3-Clause variant
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2020-04-01 02:11:51 +01:00
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homepage = "https://www.hdfgroup.org/HDF5/";
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2021-01-15 09:19:50 +00:00
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platforms = lib.platforms.unix;
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2010-08-02 09:58:53 +01:00
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};
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}
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