2021-01-11 07:54:33 +00:00
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{ lib, stdenv, fetchzip, jdk11 }:
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2016-06-26 12:47:22 +01:00
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stdenv.mkDerivation rec {
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2019-08-15 13:41:18 +01:00
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pname = "igv";
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2020-11-28 02:18:00 +00:00
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version = "2.8.13";
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2020-02-26 13:42:47 +00:00
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src = fetchzip {
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url = "https://data.broadinstitute.org/igv/projects/downloads/2.8/IGV_${version}.zip";
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2020-11-28 02:18:00 +00:00
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sha256 = "0sab478jq96iw3fv0560hrrj8qbh40r8m4ncypdb7991j9haxl09";
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2016-06-26 12:47:22 +01:00
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};
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installPhase = ''
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mkdir -pv $out/{share,bin}
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cp -Rv * $out/share/
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sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
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2020-02-26 13:42:47 +00:00
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sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh
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sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
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sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools
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2016-06-26 12:47:22 +01:00
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ln -s $out/share/igv.sh $out/bin/igv
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2020-02-26 13:42:47 +00:00
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ln -s $out/share/igvtools $out/bin/igvtools
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2016-06-26 12:47:22 +01:00
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chmod +x $out/bin/igv
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2020-02-26 13:42:47 +00:00
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chmod +x $out/bin/igvtools
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2016-06-26 12:47:22 +01:00
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'';
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2021-01-11 07:54:33 +00:00
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meta = with lib; {
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2020-04-01 02:11:51 +01:00
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homepage = "https://www.broadinstitute.org/igv/";
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2016-06-26 12:47:22 +01:00
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description = "A visualization tool for interactive exploration of genomic datasets";
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2020-02-26 13:42:47 +00:00
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license = licenses.mit;
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2016-06-26 12:47:22 +01:00
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platforms = platforms.unix;
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2019-09-14 11:15:46 +01:00
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maintainers = [ maintainers.mimame ];
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2016-06-26 12:47:22 +01:00
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};
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}
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