42 lines
1.4 KiB
Nix
42 lines
1.4 KiB
Nix
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{ stdenv, fetchurl, cmake, gcc, zlib }:
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stdenv.mkDerivation rec {
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name = "diamond-0.8.36";
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src = fetchurl {
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url = "https://github.com/bbuchfink/diamond/archive/v0.8.36.tar.gz";
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sha256 = "092smzzjcg51n3x4h84k52ijpz9m40ri838j9k2i463ribc3c8rh";
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};
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patches = [
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./diamond-0.8.36-no-warning.patch
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];
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib ];
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meta = with stdenv.lib; {
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description = "Accelerated BLAST compatible local sequence aligner";
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longDescription = ''
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A sequence aligner for protein and translated DNA
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searches and functions as a drop-in replacement for the NCBI BLAST
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software tools. It is suitable for protein-protein search as well as
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DNA-protein search on short reads and longer sequences including contigs
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and assemblies, providing a speedup of BLAST ranging up to x20,000.
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DIAMOND is developed by Benjamin Buchfink. Feel free to contact him for support (Email Twitter).
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If you use DIAMOND in published research, please cite
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B. Buchfink, Xie C., D. Huson,
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"Fast and sensitive protein alignment using DIAMOND",
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Nature Methods 12, 59-60 (2015).
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'';
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homepage = https://github.com/bbuchfink/diamond;
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license = {
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fullName = "University of Tuebingen, Benjamin Buchfink";
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url = https://raw.githubusercontent.com/bbuchfink/diamond/master/src/COPYING;
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};
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maintainers = [ maintainers.metabar ];
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};
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}
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