2018-04-24 22:53:36 +01:00
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{ stdenv
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, lib
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, makeWrapper
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, sage-env
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, sage-src
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, openblasCompat
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2018-09-07 20:55:41 +01:00
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, openblas-blas-pc
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, openblas-cblas-pc
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, openblas-lapack-pc
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2018-04-24 22:53:36 +01:00
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, pkg-config
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, three
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, singular
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, libgap
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, gap-libgap-compatible
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, giac
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, maxima-ecl
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, pari
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, gmp
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, gfan
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, python2
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, flintqs
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, eclib
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, ntl
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, ecm
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, pynac
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, pythonEnv
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}:
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let
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buildInputs = [
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pythonEnv # for patchShebangs
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makeWrapper
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pkg-config
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openblasCompat # lots of segfaults with regular (64 bit) openblas
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2018-09-07 20:55:41 +01:00
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openblas-blas-pc
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openblas-cblas-pc
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openblas-lapack-pc
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2018-04-24 22:53:36 +01:00
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singular
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three
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pynac
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giac
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libgap
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gap-libgap-compatible
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pari
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gmp
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gfan
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maxima-ecl
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eclib
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flintqs
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ntl
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ecm
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];
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# remove python prefix, replace "-" in the name by "_", apply patch_names
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# python2.7-some-pkg-1.0 -> some_pkg-1.0
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pkg_to_spkg_name = pkg: patch_names: let
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parts = lib.splitString "-" pkg.name;
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# remove python2.7-
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stripped_parts = if (builtins.head parts) == python2.libPrefix then builtins.tail parts else parts;
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version = lib.last stripped_parts;
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orig_pkgname = lib.init stripped_parts;
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pkgname = patch_names (lib.concatStringsSep "_" orig_pkgname);
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in pkgname + "-" + version;
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# return the names of all dependencies in the transitive closure
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transitiveClosure = dep:
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if isNull dep then
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# propagatedBuildInputs might contain null
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# (although that might be considered a programming error in the derivation)
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[]
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else
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[ dep ] ++ (
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if builtins.hasAttr "propagatedBuildInputs" dep then
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lib.unique (builtins.concatLists (map transitiveClosure dep.propagatedBuildInputs))
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else
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[]
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);
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allInputs = lib.remove null (buildInputs ++ pythonEnv.extraLibs);
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transitiveDeps = lib.unique (builtins.concatLists (map transitiveClosure allInputs ));
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# fix differences between spkg and sage names
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# (could patch sage instead, but this is more lightweight and also works for packages depending on sage)
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patch_names = builtins.replaceStrings [
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"zope.interface"
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"node_three"
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] [
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"zope_interface"
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"threejs"
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];
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# spkg names (this_is_a_package-version) of all transitive deps
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input_names = map (dep: pkg_to_spkg_name dep patch_names) transitiveDeps;
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in
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stdenv.mkDerivation rec {
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version = sage-src.version;
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name = "sage-with-env-${version}";
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inherit buildInputs;
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src = sage-src;
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configurePhase = "#do nothing";
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buildPhase = ''
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mkdir installed
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for pkg in ${lib.concatStringsSep " " input_names}; do
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touch "installed/$pkg"
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done
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'';
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installPhase = ''
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mkdir -p "$out/var/lib/sage"
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cp -r installed $out/var/lib/sage
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mkdir -p "$out/etc"
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# sage tests will try to create this file if it doesn't exist
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touch "$out/etc/sage-started.txt"
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mkdir -p "$out/build"
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cp -r src/bin "$out/bin"
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cp -r build/bin "$out/build/bin"
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cp -f '${sage-env}/sage-env' "$out/bin/sage-env"
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substituteInPlace "$out/bin/sage-env" \
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--subst-var-by sage-local "$out"
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'';
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}
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