2018-10-11 02:21:58 +01:00
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{ stdenv
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, buildPythonPackage
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, fetchPypi
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, cython
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, lockfile
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, cachecontrol
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, decorator
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, ipython
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, matplotlib
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, natsort
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, numpy
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, pandas
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, scipy
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, hdmedians
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, scikitlearn
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, coverage
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, python
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, isPy3k
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}:
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buildPythonPackage rec {
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2020-05-09 11:01:59 +01:00
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version = "0.5.6";
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2018-10-11 02:21:58 +01:00
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pname = "scikit-bio";
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disabled = !isPy3k;
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src = fetchPypi {
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inherit pname version;
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2020-05-09 11:01:59 +01:00
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sha256 = "48b73ec53ce0ff2c2e3e05f3cfcf93527c1525a8d3e9dd4ae317b4219c37f0ea";
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2018-10-11 02:21:58 +01:00
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};
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buildInputs = [ cython ];
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checkInputs = [ coverage ];
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propagatedBuildInputs = [ lockfile cachecontrol decorator ipython matplotlib natsort numpy pandas scipy hdmedians scikitlearn ];
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# remove on when version > 0.5.4
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postPatch = ''
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sed -i "s/numpy >= 1.9.2, < 1.14.0/numpy/" setup.py
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sed -i "s/pandas >= 0.19.2, < 0.23.0/pandas/" setup.py
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'';
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# cython package not included for tests
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doCheck = false;
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checkPhase = ''
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${python.interpreter} -m skbio.test
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'';
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meta = with stdenv.lib; {
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2020-04-01 02:11:51 +01:00
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homepage = "http://scikit-bio.org/";
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2018-10-11 02:21:58 +01:00
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description = "Data structures, algorithms and educational resources for bioinformatics";
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license = licenses.bsd3;
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maintainers = [ maintainers.costrouc ];
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};
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}
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