2019-04-15 01:22:47 +01:00
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{ stdenv, fetchFromGitHub, fetchpatch, makeWrapper, python27Packages, wget, diamond, hmmer }:
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python27Packages.buildPythonApplication rec {
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pname = "eggnog-mapper";
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version = "1.0.3";
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src = fetchFromGitHub {
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owner = "eggnogdb";
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repo = "eggnog-mapper";
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rev = "${version}";
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sha256 = "1aaaflppy84bhkh2hb5gnzm4xgrz0rz0cgfpadr9w8cva8p0sqdv";
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};
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patches = (fetchpatch {
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2019-05-13 15:00:07 +01:00
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url = "https://github.com/eggnogdb/eggnog-mapper/commit/6972f601ade85b65090efca747d2302acb58507f.patch";
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sha256 = "0abnmn0bh11jihf5d3cggiild1ykawzv5f5fhb4cyyi8fvy4hcxf";
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2019-04-15 01:22:47 +01:00
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});
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buildInputs = [ makeWrapper ];
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propagatedBuildInputs = [ python27Packages.biopython wget diamond hmmer ];
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# make emapper find diamond & hmmer
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makeWrapperArgs = [
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''--prefix PATH ':' "${diamond}/bin"''
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''--prefix PATH ':' "${hmmer}/bin"''
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];
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# Tests rely on some of the databases being available, which is not bundled
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# with this package as (1) in total, they represent >100GB of data, and (2)
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# the user can download only those that interest them.
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doCheck = false;
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meta = with stdenv.lib; {
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description = "Fast genome-wide functional annotation through orthology assignment";
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license = licenses.gpl2;
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homepage = https://github.com/eggnogdb/eggnog-mapper/wiki;
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maintainers = with maintainers; [ luispedro ];
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platforms = platforms.all;
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};
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}
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