2019-12-18 04:09:56 +00:00
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{ lib, fetchFromGitHub, buildPythonPackage, isPy27, numpy, cython, zlib, six
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, python-lzo, nose }:
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buildPythonPackage rec {
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pname = "bx-python";
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2021-03-17 05:38:15 +00:00
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version = "0.8.11";
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2019-12-18 04:09:56 +00:00
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disabled = isPy27;
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src = fetchFromGitHub {
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owner = "bxlab";
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repo = "bx-python";
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rev = "v${version}";
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2021-03-17 05:38:15 +00:00
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sha256 = "0cz5vgw19hmkcg689vr540q2gl2lb3xcf1lphm7zbfp8wmypcadm";
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2019-12-18 04:09:56 +00:00
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};
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nativeBuildInputs = [ cython ];
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buildInputs = [ zlib ];
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propagatedBuildInputs = [ numpy six python-lzo ];
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checkInputs = [ nose ];
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postInstall = ''
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cp -r scripts/* $out/bin
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# This is a small hack; the test suit uses the scripts which need to
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# be patched. Linking the patched scripts in $out back to the
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# working directory allows the tests to run
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rm -rf scripts
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ln -s $out/bin scripts
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'';
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meta = with lib; {
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homepage = "https://github.com/bxlab/bx-python";
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description =
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"Tools for manipulating biological data, particularly multiple sequence alignments";
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license = licenses.mit;
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maintainers = [ maintainers.jbedo ];
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platforms = [ "x86_64-linux" ];
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};
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}
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