2020-02-24 22:11:48 +00:00
|
|
|
{ lib
|
|
|
|
|
, buildPythonPackage
|
|
|
|
|
, fetchFromGitHub
|
|
|
|
|
, isPy27
|
|
|
|
|
, packaging
|
|
|
|
|
, pytest
|
|
|
|
|
, cython
|
|
|
|
|
, numpy
|
|
|
|
|
, scipy
|
|
|
|
|
, h5py
|
|
|
|
|
, nibabel
|
2020-11-13 23:46:13 +00:00
|
|
|
, tqdm
|
2020-02-24 22:11:48 +00:00
|
|
|
}:
|
|
|
|
|
|
|
|
|
|
buildPythonPackage rec {
|
|
|
|
|
pname = "dipy";
|
2020-11-13 23:46:13 +00:00
|
|
|
version = "1.3.0";
|
2020-02-24 22:11:48 +00:00
|
|
|
|
|
|
|
|
disabled = isPy27;
|
|
|
|
|
|
|
|
|
|
src = fetchFromGitHub {
|
|
|
|
|
owner = "dipy";
|
|
|
|
|
repo = pname;
|
|
|
|
|
rev = version;
|
2020-11-13 23:46:13 +00:00
|
|
|
sha256 = "0555abx0fwqmk6dc3im7r45d9j7r9xh6gm9mbwfwvlf7laf8h098";
|
2020-02-24 22:11:48 +00:00
|
|
|
};
|
|
|
|
|
|
|
|
|
|
nativeBuildInputs = [ cython packaging ];
|
|
|
|
|
propagatedBuildInputs = [
|
|
|
|
|
numpy
|
|
|
|
|
scipy
|
|
|
|
|
h5py
|
|
|
|
|
nibabel
|
2020-11-13 23:46:13 +00:00
|
|
|
tqdm
|
2020-02-24 22:11:48 +00:00
|
|
|
];
|
|
|
|
|
|
|
|
|
|
checkInputs = [ pytest ];
|
|
|
|
|
|
|
|
|
|
# disable tests for now due to:
|
|
|
|
|
# - some tests require data download (see dipy/dipy/issues/2092);
|
|
|
|
|
# - running the tests manually causes a multiprocessing hang;
|
|
|
|
|
# - import weirdness when running the tests
|
|
|
|
|
doCheck = false;
|
|
|
|
|
|
|
|
|
|
pythonImportsCheck = [
|
|
|
|
|
"dipy"
|
|
|
|
|
"dipy.core"
|
|
|
|
|
"dipy.direction"
|
|
|
|
|
"dipy.tracking"
|
|
|
|
|
"dipy.reconst"
|
|
|
|
|
"dipy.io"
|
|
|
|
|
"dipy.viz"
|
|
|
|
|
"dipy.boots"
|
|
|
|
|
"dipy.data"
|
|
|
|
|
"dipy.utils"
|
|
|
|
|
"dipy.segment"
|
|
|
|
|
"dipy.sims"
|
|
|
|
|
"dipy.stats"
|
|
|
|
|
"dipy.denoise"
|
|
|
|
|
"dipy.workflows"
|
|
|
|
|
"dipy.nn"
|
|
|
|
|
];
|
|
|
|
|
|
|
|
|
|
meta = with lib; {
|
|
|
|
|
homepage = "https://dipy.org/";
|
|
|
|
|
description = "Diffusion imaging toolkit for Python";
|
|
|
|
|
license = licenses.bsd3;
|
|
|
|
|
maintainers = with maintainers; [ bcdarwin ];
|
|
|
|
|
};
|
|
|
|
|
}
|
