Removed a warning

Chapter1/chapter1.tex

@@ -5,7 +5,7 @@
 \chapter{Background}  %Title of the First Chapter
 
 %********************************** %First Section  **************************************
-\section{What is Loren Ipsum?} %Section - 1.1 
+\section{What is Loren Ipsum? Title with Math \texorpdfstring{$\sigma$}{[sigma]}} %Section - 1.1 
 
 Lorem Ipsum is simply dummy text of the printing and typesetting industry~\cref{section1.3}. Lorem Ipsum\citet{Aup91,Ancey1996} has been the industry's standard dummy text ever since the 1500s, when an unknown printer took a galley of type and scrambled it to make a type specimen book. It has survived not only five centuries, but also the leap into electronic typesetting, remaining essentially unchanged. It was popularised in the 1960s with the release of Letraset sheets containing Lorem Ipsum passages, and more recently with desktop publishing software like Aldus PageMaker including versions of Lorem Ipsum~\cite{AAB95,Con90,LM65}.
 

Classes/PhDThesisPSnPDF.cls

@@ -58,7 +58,6 @@
 	\hypersetup{
           plainpages=false, 
           pdfstartview=FitV,
-          unicode=true, 
           pdftoolbar=true, 
           pdfmenubar=true,
           bookmarksopen=true,
@@ -84,7 +83,6 @@
 	\hypersetup{
           plainpages=false,
           pdfstartview=FitV, 
-          unicode=true,
           pdftoolbar=true, 
           pdfmenubar=true,
           bookmarksopen=true,
@@ -102,7 +100,7 @@
 \fi
 
 % index - puts the index at the end of the thesis.
-%
+
 \newif\ifCU@index\CU@indexfalse
 \DeclareOption{index}{\CU@indextrue}
 \ProcessOptions\relax
@@ -193,14 +191,6 @@
 
 
 %******************************************************* %
-%A4 settings
-\ifpdf
-   \pdfpageheight=297mm
-   \pdfpagewidth=210mm
-\else
-   \setlength{\paperheight}{297mm}
-   \setlength{\paperwidth}{210mm}
-\fi
 
 
 % Setting PDF Meta-Data
@@ -273,13 +263,13 @@
 \fancyfoot{}
 
 
-\renewcommand{\headrulewidth}{0.5pt}
-\renewcommand{\footrulewidth}{0pt}
-\addtolength{\headheight}{0.5pt}
-\fancypagestyle{plain}{
-  \fancyhead{}
-  \renewcommand{\headrulewidth}{0pt}
-}
+%\renewcommand{\headrulewidth}{0.5pt}
+%\renewcommand{\footrulewidth}{0pt}
+%\addtolength{\headheight}{0.5pt}
+%\fancypagestyle{plain}{
+%  \fancyhead{}
+%  \renewcommand{\headrulewidth}{0pt}
+%}
 
 
 \newcommand{\submissiontext}{{A thesis submitted for the degree of}}

thesis.tex

@@ -41,7 +41,6 @@
 
 %**************************Front Matter********************************************* %
 \begin{document}
-
 \frontmatter
 
 \begin{titlepage}